PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Thecc1EG000076t1 | ||||||||
Common Name | TCM_000076 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 272aa MW: 29221.8 Da PI: 4.4835 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.8 | 0.00036 | 147 | 167 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C C k+F+++ H+r+H Thecc1EG000076t1 147 CYVCQKTFPTWRGVFGHLRSH 167 88*****************99 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 9.058 | 145 | 172 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 147 | 167 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0048235 | Biological Process | pollen sperm cell differentiation | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 272 aa Download sequence Send to blast |
MTKPTGTAQE EFSAEEEEQQ ESSEEVDSLQ VAQGARERSA GQINETYVTQ SEKGDDGDNV 60 KIQGGGDQHP MGQSETESCD ETEGSKRDDV KGQGGDDQDQ GGAGASRFLL IGQKRGRAGD 120 PTHVASSSEL KPRKKGELEL PGCPPMCYVC QKTFPTWRGV FGHLRSHNRQ TPGAFPPPTF 180 TPVGSPEGKN GDNPLTHDLA PMMLNLARET LGKMHQDHLS RSATVSAGGA SSSMRIFGMD 240 LSESRNRTTP FLFDLNEPAP EEEDDADDGK N* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017976854.1 | 0.0 | PREDICTED: uncharacterized protein LOC18610657 isoform X1 | ||||
TrEMBL | A0A061DL63 | 0.0 | A0A061DL63_THECC; Uncharacterized protein | ||||
STRING | EOX90678 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5875 | 22 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G35700.1 | 2e-10 | C2H2 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Thecc1EG000076t1 |
Entrez Gene | 18610657 |
Publications ? help Back to Top | |||
---|---|---|---|
|