PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_7DS_E27ECBC6E.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB | ||||||||
Protein Properties | Length: 335aa MW: 38459.8 Da PI: 6.8568 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 40.6 | 5.8e-13 | 50 | 86 | 11 | 48 |
HHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 11 llvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +lv++v+q+G + W+ Ia++++ gR +kqc++rw+++l Traes_7DS_E27ECBC6E.1 50 KLVKLVEQFGLRKWSQIAQMLP-GRVGKQCRERWHNHL 86 89********************.*************97 PP | |||||||
2 | Myb_DNA-binding | 50.5 | 4.7e-16 | 92 | 134 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++ W++eEd l++ +k+ G++ W+ Ia++++ gRt++++k++w+ Traes_7DS_E27ECBC6E.1 92 KDTWSEEEDMVLIQTHKEVGNK-WAEIAKRLP-GRTENSIKNHWN 134 679*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.879 | 39 | 86 | IPR017930 | Myb domain |
Pfam | PF13921 | 1.3E-15 | 49 | 100 | No hit | No description |
SMART | SM00717 | 3.3E-5 | 49 | 88 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.12E-10 | 49 | 86 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.0E-24 | 49 | 93 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.4E-28 | 66 | 143 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 25.041 | 87 | 141 | IPR017930 | Myb domain |
SMART | SM00717 | 2.5E-15 | 91 | 139 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.67E-11 | 94 | 137 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-21 | 94 | 139 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 335 aa Download sequence Send to blast |
MDAGRRQVRI RYVVSCLVQY FLCLQHCKSV LLLAILRWYQ EVRSCKFYRK LVKLVEQFGL 60 RKWSQIAQML PGRVGKQCRE RWHNHLRPNI KKDTWSEEED MVLIQTHKEV GNKWAEIAKR 120 LPGRTENSIK NHWNATKRRQ FARRRTRTSA KNPKSGTLLQ NYIKSLGIGS SKVTAAPLAP 180 KEPPLSPSSP APPTQNLAQV NDSWSESNPS STMITQGLFS TDDREADSWE EILVPTCDDF 240 SVDMCDGLFD TKEDAQYPVY SIDDDVDMDY IFNHMDYTIK IDHEIDMEMA WCDDALANIE 300 SGSSPLVTAV GPTEIKTVQV KEEMDLVELV TRTQT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 5e-39 | 50 | 141 | 14 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 3e-38 | 50 | 141 | 68 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 3e-38 | 50 | 141 | 68 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 5e-39 | 50 | 141 | 14 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 5e-39 | 50 | 141 | 14 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020184036.1 | 0.0 | myb-related protein Myb4-like | ||||
TrEMBL | A0A3B6TL67 | 0.0 | A0A3B6TL67_WHEAT; Uncharacterized protein | ||||
STRING | Traes_7DS_E27ECBC6E.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2806 | 37 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18770.1 | 4e-53 | myb domain protein 98 |
Publications ? help Back to Top | |||
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