PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_7DS_C74DAC3CE.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB_related | ||||||||
Protein Properties | Length: 85aa MW: 9893.95 Da PI: 11.3037 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26.3 | 1.8e-08 | 45 | 72 | 3 | 30 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIart 30 rW+ E+e l ++v+q+G+ +Wk I + Traes_7DS_C74DAC3CE.1 45 RWSSVEEETLRKGVEQFGSSNWKDILIH 72 9************************866 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.8E-8 | 38 | 82 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.39E-8 | 40 | 83 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 5.1E-6 | 45 | 72 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 85 aa Download sequence Send to blast |
QWEDSLDPDG SRSQSHRPHL PSPRRISVSP LQVAENKARR RRARRWSSVE EETLRKGVEQ 60 FGSSNWKDIL IHNSDAFIGR TTVWT |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK375507 | 2e-78 | AK375507.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3096E16. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020185046.1 | 3e-50 | uncharacterized protein LOC109770747 | ||||
TrEMBL | A0A453QXN8 | 5e-51 | A0A453QXN8_AEGTS; Uncharacterized protein | ||||
STRING | Traes_7DS_C74DAC3CE.1 | 4e-55 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3154 | 30 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G15720.1 | 1e-08 | TRF-like 5 |
Publications ? help Back to Top | |||
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