PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_7DS_B8013B22B.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | bHLH | ||||||||
Protein Properties | Length: 68aa MW: 7865 Da PI: 7.5373 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 29.9 | 1e-09 | 14 | 56 | 7 | 54 |
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + E++RR+r+ ++f L l+P++ +K + a++ A+eYI++L Traes_7DS_B8013B22B.1 14 KKEKQRRQRLSEKFTALMLLIPNR-----TKEDRATVIYDAIEYIQEL 56 67*********************9.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.357 | 7 | 56 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 8.9E-6 | 13 | 62 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.3E-7 | 14 | 56 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.9E-10 | 15 | 63 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.01E-11 | 15 | 65 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.74E-7 | 16 | 56 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 68 aa Download sequence Send to blast |
SSFHGFPANG GVEKKEKQRR QRLSEKFTAL MLLIPNRTKE DRATVIYDAI EYIQELGRTV 60 EELTLLVE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the E-box-containing promoter regions of the transcription factors TDR and EAT1, activating their expression. May have a role in specifying the cell pattern of the inner anther walls and functioning in meiosis progression. Required for male reproduction (PubMed:24755456). Acts downstream of UDT1 and GAMYB, but upstream of TDR1 and EAT1 in pollen development (PubMed:24894043). {ECO:0000269|PubMed:24755456, ECO:0000269|PubMed:24894043}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK106850 | 2e-56 | AK106850.1 Oryza sativa Japonica Group cDNA clone:002-118-A11, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020175517.1 | 2e-40 | transcription factor TIP2-like | ||||
Swissprot | Q5JNS0 | 4e-30 | TIP2_ORYSJ; Transcription factor TIP2 | ||||
TrEMBL | A0A3B6S932 | 5e-39 | A0A3B6S932_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A3B6T9W4 | 4e-39 | A0A3B6T9W4_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446Y251 | 4e-39 | A0A446Y251_TRITD; Uncharacterized protein | ||||
TrEMBL | M7YSI1 | 4e-39 | M7YSI1_TRIUA; Transcription factor bHLH89 | ||||
TrEMBL | R7W687 | 4e-39 | R7W687_AEGTA; Transcription factor bHLH91 | ||||
STRING | Traes_7DS_B8013B22B.1 | 9e-43 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1904 | 37 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31210.1 | 2e-13 | bHLH family protein |
Publications ? help Back to Top | |||
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