PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_7DS_AB399594E.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | SBP | ||||||||
Protein Properties | Length: 940aa MW: 104543 Da PI: 7.2205 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 130.2 | 7.2e-41 | 1 | 78 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C+adl++ak+yhrrhkvCe+hsk+++++v +++qrfCqqCsrfh lsefDe+krsCrrrLa+hn+rrrk+q+ Traes_7DS_AB399594E.2 1 MCQVDDCRADLTSAKDYHRRHKVCEIHSKTTKAVVGNQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQP 78 6**************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.1E-31 | 1 | 63 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.017 | 1 | 76 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 4.32E-37 | 1 | 79 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 7.1E-30 | 2 | 75 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 940 aa Download sequence Send to blast |
MCQVDDCRAD LTSAKDYHRR HKVCEIHSKT TKAVVGNQMQ RFCQQCSRFH PLSEFDEGKR 60 SCRRRLAGHN RRRRKTQPTD VASQLLLPEN QENAANRTQD IVNLITVIAR LQGGNVGKLP 120 SIPPIPDKDN LVQIISKINS INNANSVAKS PPSEAIDLNA SQGQQQDSSV QNATKVVDKQ 180 TVPSTMDLLT VLSGALGTST PETNTSQSQG SSDSSGNNKS KSHSTEPACV VNSHEKSIRP 240 FPAAGMLRSS STHGSPPEVY KQPDRDTHPY LSLQLFGNNE DIPVKMDTAN KYLSSESSNP 300 MDERSPSSSP PVTHTFFPTR SVNEGIRHPR IADYGEDGAT VENSTTRAWC APPLELFKDS 360 ERPTENGSPP NPTYQSCYAS TSGSDHSPST SNSDGQDRTG KIIFKLFGKE PGSIPGNLRD 420 EVVNWLKHSP TEMEGYIRPG CLVLSMYLSM PTIAWDELEE NFLQRVNSLV QASDLDFWRK 480 GRFLVRSDNQ LVSYKDGMTR LSKSWRTWNT PELTLVTPIA VVGGRKTSLV LKGRNLTIPG 540 TQIHCTSAGK YISKEVLCSA YPGTIYDDSG VETFDLPGEP SLTLGRCFIE VENRFRGNSF 600 PVIFANKSIC QELRNLEDEL EDSRFPDVSP DDQVHDARRL KPRDQVLHFL NELGWLFQKA 660 AACTPSTKSD VSHSELIQFS TARFRHLLLF SNERDWCSLT KTLLEILTKR SMVSDELSHE 720 TLEMLSEIHL LNRAVKRKSS HMVHLLVQFV VICPDNSKLY PFLPNYPGPG GLTPLHLAAS 780 IDDAEDIVDA LTDDPQQIGL SCWHSVLDDE GLSPEVYATF RNNGSYNELV TRKLMDRKNS 840 QVTIVLNKGE IHMDQPGNVG ANNASGIQAL EIRSCNQCAI LESGLLRRPM RSRGLLARPY 900 IHSMLAIAAV CVCVCVFMRA LLRFNSGRSF KWERLDFGPT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 2e-31 | 1 | 75 | 10 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}. | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF447879 | 0.0 | KF447879.1 Triticum aestivum squamosa promoter-binding-like protein 15 (SPL15) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020179484.1 | 0.0 | squamosa promoter-binding-like protein 15 | ||||
Swissprot | A2YX04 | 0.0 | SPL15_ORYSI; Squamosa promoter-binding-like protein 15 | ||||
Swissprot | Q6Z8M8 | 0.0 | SPL15_ORYSJ; Squamosa promoter-binding-like protein 15 | ||||
TrEMBL | M8CE60 | 0.0 | M8CE60_AEGTA; Squamosa promoter-binding-like protein 15 | ||||
STRING | EMT21456 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5456 | 38 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76580.1 | 0.0 | SBP family protein |