PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7DS_A4CA05A36.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 422aa    MW: 45586.6 Da    PI: 6.1941
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7DS_A4CA05A36.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.36.7e-09274322355
                            HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                             +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  Traes_7DS_A4CA05A36.1 274 NSHSLAERVRREKISERMKFLQDLVPGC----SKVIGKAVMLDEIINYVQSLQ 322
                            58*************************9....566*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.85E-10269326No hitNo description
SuperFamilySSF474591.15E-16269339IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.205271321IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.8E-16274336IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.7E-6274322IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-9277327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009911Biological Processpositive regulation of flower development
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
METNEKNAND LEEKNQPSGH SQQPSFHGPG FSLSPEPQMD SSSSALAAMG NPFPPGLWNP  60
PGQNFGLGET NTNAMLNGHQ FSSFLGMLSA ATPAYPGAPS GFMDCGTGFP GLSANSLGAM  120
MDHPFSRNPP MGSFQNDIET SREMNVDEGC KDALLTGDRQ QGDTESSHGV DASSKDLSKP  180
ECSGGAGQDE GPSVSCPKKR KRPSQDRGVK HVQEGSQQLA TLAAKQEKDD DDKDEPKRPI  240
GTSRKSNGKQ TEDKSDAPKE DYIHIRARSG QATNSHSLAE RVRREKISER MKFLQDLVPG  300
CSKVIGKAVM LDEIINYVQS LQRQVEFLSM KLSAVNPALD FNIERILSKD LFQSQGTASS  360
TFGFLPDIGH QFLHPPKHSQ AALHSIVNPA DAFGRVTNAP VGCTFKEATH QVPGRFPIDL  420
PQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1196202PKKRKRP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3691070.0AK369107.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2085G12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020151883.10.0transcription factor bHLH49-like
TrEMBLA0A3B6TNC10.0A0A3B6TNC1_WHEAT; Uncharacterized protein
TrEMBLA0A453RBT20.0A0A453RBT2_AEGTS; Uncharacterized protein
TrEMBLM8BWL50.0M8BWL5_AEGTA; Transcription factor bHLH49
STRINGTraes_7DS_A4CA05A36.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP146241923
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.32e-60bHLH family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]