PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_7DS_91CCCF6DB.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB | ||||||||
Protein Properties | Length: 328aa MW: 35411.9 Da PI: 6.7811 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55 | 1.9e-17 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WTteEd+ll d++++ G g+W++ ++ g++R++k+c++rw +yl Traes_7DS_91CCCF6DB.1 15 KGPWTTEEDKLLMDYIQEKGHGSWRRLPKLAGLNRCGKSCRLRWTNYL 62 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 57 | 4.3e-18 | 68 | 113 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rgr+T +E++l+++++ +lG++ W++Ia +++ gRt++++k++w+++l Traes_7DS_91CCCF6DB.1 68 RGRFTDDEEKLIIHLHSLLGNK-WSSIATKLP-GRTDNEIKNYWNTHL 113 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.189 | 10 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.17E-30 | 12 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.9E-13 | 14 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.2E-16 | 15 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.9E-23 | 16 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.86E-10 | 17 | 62 | No hit | No description |
PROSITE profile | PS51294 | 27.692 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 1.4E-16 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.1E-16 | 68 | 113 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.71E-13 | 70 | 113 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.0E-26 | 70 | 117 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 328 aa Download sequence Send to blast |
MGRSPCCDGE AGVKKGPWTT EEDKLLMDYI QEKGHGSWRR LPKLAGLNRC GKSCRLRWTN 60 YLRPDIKRGR FTDDEEKLII HLHSLLGNKW SSIATKLPGR TDNEIKNYWN THLRKKLLRM 120 GIDPVTHRPR TDLSMLAGLP GLLAAXGNFG GSGAGTAAWD MNALKLQVDV AKFQLLQGLV 180 RALTTAAAPA PAPGMDYLME LLAVSNGGQH GGVDQNILLQ QCQWNHMNNL PALTSSAPTS 240 GMHNISGLFD GFSAGDGLSS TELGGHGGAS WSKVTVDPLM ADDIECKNNG GGSVSCEQTP 300 ASSPFDGLES LNLMDDLNTD GGWKDLLE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 1e-28 | 15 | 117 | 4 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 2e-28 | 15 | 117 | 4 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 2e-28 | 15 | 117 | 4 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727665 | 1e-124 | KJ727665.1 Zea mays clone pUT5592 MYB transcription factor (MYB148) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020162283.1 | 0.0 | transcription factor MYB39-like | ||||
Swissprot | Q8GWP0 | 3e-78 | MYB39_ARATH; Transcription factor MYB39 | ||||
TrEMBL | A0A3B6TBM0 | 0.0 | A0A3B6TBM0_WHEAT; Uncharacterized protein | ||||
STRING | Traes_7DS_91CCCF6DB.1 | 0.0 | (Triticum aestivum) | ||||
STRING | Traes_7DS_91CCCF6DB1.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5529 | 31 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G16770.2 | 3e-79 | myb domain protein 9 |
Publications ? help Back to Top | |||
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