PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_7DS_68E3ACF8E.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | bHLH | ||||||||
Protein Properties | Length: 480aa MW: 51290 Da PI: 4.5345 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35.3 | 2e-11 | 330 | 375 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR++i +++ +L++l+P++ K +K+++L + ++Y+k Lq Traes_7DS_68E3ACF8E.1 330 HSIAERLRREKISERMKNLQDLVPNS-----NKADKSSMLDEIIDYVKFLQ 375 99***********************7.....5******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.14E-16 | 323 | 385 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.61E-12 | 323 | 379 | No hit | No description |
PROSITE profile | PS50888 | 16.901 | 325 | 374 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.2E-16 | 327 | 384 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.5E-8 | 330 | 375 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.8E-13 | 331 | 380 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 480 aa Download sequence Send to blast |
MDYSNGSFFP SWPGNSASEN YSFVDGSVES YAEEGSMPPT GYFRARSNQN LTFDEHEQNP 60 AMLANGCLPY NTQTDLLSGE ILSEDKHSNS LMELPQLQNN GSLQSNLIPP GTLQCTSTPG 120 TFDLQLDTPG LLELPHALSS SIESNGSEVS AFLADVHAVS SASTLCSTFQ NVPSYMEPVS 180 LEAFSFQGIQ NAAMFNNTSH SNGNLSVFDE ATMASLHDSK EFLSGSISSF GTAEQSQLAG 240 SGLKAEQQEQ NAMCNIPLPF ASGSQMAVSE AQGAMIPSKI SSTMHNNKSE YPVPISHSAD 300 AQNKANSANG NSASAKPRAR ARRGQATDPH SIAERLRREK ISERMKNLQD LVPNSNKADK 360 SSMLDEIIDY VKFLQLQVKV LSMSRLGAPG AVLPLLAESQ TEGRSNSPLS SPTASQGLLD 420 AAGPEDSLVF EQEVIKLMET SITNAMQYLQ NKGLCLMPIA LASAISNQKG TSAAAIPPER |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ979392 | 0.0 | DQ979392.1 Triticum aestivum cultivar PH85-16 PTF1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020198859.1 | 0.0 | uncharacterized protein LOC109784671 | ||||
TrEMBL | A0A3B6TMK9 | 0.0 | A0A3B6TMK9_WHEAT; Uncharacterized protein | ||||
STRING | Traes_7DS_68E3ACF8E.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3254 | 38 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24260.1 | 4e-47 | LJRHL1-like 1 |
Publications ? help Back to Top | |||
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