PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_7DS_6418D89A3.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | NAC | ||||||||
Protein Properties | Length: 349aa MW: 39161.8 Da PI: 6.84 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 170.2 | 6.4e-53 | 16 | 144 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 lp+GfrFhPtd e++++yL +kv +k++++ vi+evd++k+ePwdLp++v+ +ek+ yfFsk+d ky+tg r+nrat++gyWkatgk Traes_7DS_6418D89A3.1 16 LPAGFRFHPTDVEIITFYLVHKVLKKPFDV-IVIEEVDLNKCEPWDLPNNVNMGEKDQYFFSKKDLKYPTGVRTNRATNAGYWKATGK 102 799***************************.99***************99999*********************************** PP NAM 89 dkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129 dke+++ + +lvg+kktLvfykgrap+gekt+W+mheyrle Traes_7DS_6418D89A3.1 103 DKEIVHPpTMSLVGMKKTLVFYKGRAPRGEKTNWIMHEYRLE 144 ******978889****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.44E-57 | 8 | 179 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 54.525 | 16 | 179 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.4E-26 | 17 | 143 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 349 aa Download sequence Send to blast |
MAAHLHVQHQ QQHLNLPAGF RFHPTDVEII TFYLVHKVLK KPFDVIVIEE VDLNKCEPWD 60 LPNNVNMGEK DQYFFSKKDL KYPTGVRTNR ATNAGYWKAT GKDKEIVHPP TMSLVGMKKT 120 LVFYKGRAPR GEKTNWIMHE YRLEMGKQHT PDLPTDIVRA ASINATSKEE YVVCRIFHKS 180 TGLKKVVMPS YSMPIPMSMG EEQQQGFLES NTLAPLMDYD VPSSLAPLPP LPAASLYQMH 240 NFGAGASMMG SAVLPMMNNQ YFENHHHQMM VAPPQSSMSF YNNQQQQMMH MSAEQDFMVG 300 VDPGSGTSSI VSHEDVLTGT SNNIQGNAGA TISSEISSVN MGMDGMWNY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-47 | 2 | 185 | 1 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-47 | 2 | 185 | 1 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-47 | 2 | 185 | 1 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-47 | 2 | 185 | 1 | 171 | NO APICAL MERISTEM PROTEIN |
4dul_A | 2e-47 | 2 | 185 | 1 | 171 | NAC domain-containing protein 19 |
4dul_B | 2e-47 | 2 | 185 | 1 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HM027575 | 0.0 | HM027575.2 Triticum aestivum NAC transcription factor NAM (NAM) mRNA, complete cds. | |||
GenBank | KT761189 | 0.0 | KT761189.1 Triticum aestivum NAM like-protein transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020148654.1 | 0.0 | NAC domain-containing protein 100-like | ||||
Refseq | XP_020166014.1 | 0.0 | NAC domain-containing protein 100-like | ||||
TrEMBL | A0A3B6TMQ9 | 0.0 | A0A3B6TMQ9_WHEAT; Uncharacterized protein | ||||
STRING | Traes_7DS_6418D89A3.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1452 | 37 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18400.1 | 5e-71 | NAC domain containing protein 58 |
Publications ? help Back to Top | |||
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