PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Traes_7DS_559DD9894.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
||||||||
Family | FAR1 | ||||||||
Protein Properties | Length: 734aa MW: 83857.3 Da PI: 7.2635 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 68.7 | 1.4e-21 | 41 | 127 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 Y++Y++++GFsvrk k+++ ++ i +++++Cskeg + +e + +++ +r+ trt+Cka+++ + +++g+w v++++ HnH+l Traes_7DS_559DD9894.1 41 LYCDYGHRIGFSVRKGKQSYFIGTRDIRTKDYYCSKEGLKYDEPVT--EANFNRPDTRTNCKAMVRFRVDEKGRWTVIRFVPLHNHQL 126 7********************9999****************99988..9999***********************************9 PP FAR1 90 a 90 a Traes_7DS_559DD9894.1 127 A 127 7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.3E-19 | 41 | 127 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 7.5E-32 | 249 | 342 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.038 | 530 | 566 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 3.5E-6 | 531 | 563 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 2.1E-5 | 541 | 568 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 734 aa Download sequence Send to blast |
MRKNGEAGKK GEDHGNALSR KEATEELIGC MVHSEEEAYK LYCDYGHRIG FSVRKGKQSY 60 FIGTRDIRTK DYYCSKEGLK YDEPVTEANF NRPDTRTNCK AMVRFRVDEK GRWTVIRFVP 120 LHNHQLAKPG ERHLLRSAKS FAVGKSGVID PAESAESHAM NGSSDRTVGD ISEPPGYTTR 180 DCYNHDNVQN ITLIGAGDSQ SLVSYFKRRT NEEGMFYWDV QVDQEGRMTN FFFRDGKSRS 240 DYDCFGDAVI FDTTYRTNKY SLICAPFVGV NHHWHNVVFG FAFLLDDSTA SYVWLFKSFL 300 ESMGGRSPKS IFTDQDEAIM QAAEQVFPNT RHCFSYWHIL KNAQSHLGTV NTSQAFQNMF 360 MKCMQGCDTE MELQESWDAM LDEYKLQDND WLNGLYKFHN RWCSVFNKDT FDGGINSSQW 420 GEVSNNILTG VADESTSITR FALLLEKVVK TLRRNESEED FRCSQTAPVR AIKHSTVLKQ 480 AAESYTHRMY KLFEAEFLDG CGATSCHENS CGGSLLRFEI TMQGRGSKMW TVLLDTSTME 540 ISCGCGKFER MGLLCSHALK AFSLQNVDMV PEKYILKRWT KDARRSMYNL SQEDSTQQEC 600 TEAELAYRNR AMQYAYNLAL KSQELEEARK IFWDSLETGE KALEVFFEMR NLHAQSAKDA 660 STREKKKKKK IPKGPKKAKQ ALASSSAAPV LTAQTNEQQF QSAQDANGNA TIGRSYYYQV 720 HINMYEMLSF LLAF |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 665 | 676 | KKKKKIPKGPKK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK371105 | 0.0 | AK371105.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2125C10. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020195842.1 | 0.0 | protein FAR1-RELATED SEQUENCE 9-like | ||||
TrEMBL | A0A453QU70 | 0.0 | A0A453QU70_AEGTS; Uncharacterized protein | ||||
STRING | Traes_7DS_559DD9894.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18 | 32 | 967 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G38180.1 | 2e-98 | FAR1-related sequence 5 |
Publications ? help Back to Top | |||
---|---|---|---|
|