PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7DS_538404789.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 297aa    MW: 32374 Da    PI: 6.5113
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7DS_538404789.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.92.1e-09136184455
                            HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            +h+ +Er RR+ri +++  L++l+P +   ++    Ka +L + ++Y++sLq
  Traes_7DS_538404789.2 136 SHSLAERVRRERISERMRLLQTLVPGC---DKVVTGKALVLDEIINYVQSLQ 184
                            8**************************...8888*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.74E-9130188No hitNo description
SuperFamilySSF474593.93E-16130199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.002132183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-6136184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-14136197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-9138189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MADFSSAHHH SLLKMPEVFT TNDTSTPNIS SFLLYNQTSH GQSPAPANAC AAMVEDASRE  60
SSSAVLDNAS LQASASVDRK RKATDDSTTL SSAHSKDCKD GKSRRKREKS STEQDQEEAP  120
KGYIHVRARR GQATDSHSLA ERVRRERISE RMRLLQTLVP GCDKVVTGKA LVLDEIINYV  180
QSLQNQVEFL SMRIASMSPV LYGFGLDSDG LHDQAQKIGG MFQQEALAVP APALNQASPA  240
ASQAMMDTTS YSLQGQGGIS FSQSQSQDSG SYLMQSVGEQ RQELLNQLVF SNMCSFQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1103108RRKREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2508100.0AK250810.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf86g20, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020188652.10.0transcription factor bHLH137-like
TrEMBLA0A3B6TJ110.0A0A3B6TJ11_WHEAT; Uncharacterized protein
STRINGTraes_7DS_538404789.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23583791
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.22e-42bHLH family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]