PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_7DS_47B5A7FFF.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | bZIP | ||||||||
Protein Properties | Length: 209aa MW: 23243.8 Da PI: 11.1067 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 34.8 | 3.7e-11 | 15 | 73 | 5 | 63 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 k+++r NR +A rs +RK +i eLe+kv++L ae ++L +l l a l +++ Traes_7DS_47B5A7FFF.1 15 KKAKRIWANRQSAARSKERKMRYISELERKVQTLHAEATTLSTQLALLHRDTAGLSTKN 73 899******************************************99998888877766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.9E-14 | 11 | 75 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.438 | 13 | 76 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 6.0E-10 | 15 | 73 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 1.5E-10 | 15 | 70 | No hit | No description |
SuperFamily | SSF57959 | 4.71E-11 | 15 | 66 | No hit | No description |
CDD | cd14703 | 2.01E-20 | 16 | 67 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MSNAKLAELA LVDPKKAKRI WANRQSAARS KERKMRYISE LERKVQTLHA EATTLSTQLA 60 LLHRDTAGLS TKNSELKMRL QNVQQQIHLQ DALNDALKSE LQRLKMATSH MGNTVGGMMN 120 LIGPPPPHSV GGNQPMFHIQ GQAAMQPLHQ MQQIHPQHQQ PLLHPLQLQA QQLLLQQQAS 180 AAPPPNPKMK RAISAPNQWI GGWSESSGN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269|PubMed:11390974, ECO:0000269|PubMed:12855676, ECO:0000269|PubMed:14704272, ECO:0000269|PubMed:9311985}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK376677 | 0.0 | AK376677.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3131F12. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020181798.1 | 1e-147 | transcription factor RF2a-like | ||||
Refseq | XP_020181799.1 | 1e-147 | transcription factor RF2a-like | ||||
Swissprot | Q69IL4 | 6e-59 | RF2A_ORYSJ; Transcription factor RF2a | ||||
TrEMBL | A0A3B6TJ58 | 1e-146 | A0A3B6TJ58_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A453RPH5 | 1e-146 | A0A453RPH5_AEGTS; Uncharacterized protein | ||||
STRING | Traes_7DS_47B5A7FFF.1 | 1e-149 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP29023 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G06070.1 | 4e-52 | bZIP family protein |