PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7DS_433704E8E1.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ERF
Protein Properties Length: 119aa    MW: 13192.8 Da    PI: 10.5408
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7DS_433704E8E1.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.44.2e-19756255
                     AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                            +y+GVr+++ +g+Wv+eIr+p        +r++lg+f tae+Aa+a+++a++ + g
  Traes_7DS_433704E8E1.1  7 RYRGVRQRH-WGSWVSEIRHP-----LlkTRIWLGTFETAEDAARAYDEAARIMCG 56
                            69******9.**********8.....334**********************98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381234.1E-201115IPR017392AP2/ERF transcription factor ERF/PTI6
CDDcd000187.47E-31665No hitNo description
Gene3DG3DSA:3.30.730.103.0E-34765IPR001471AP2/ERF domain
SMARTSM003805.1E-36770IPR001471AP2/ERF domain
SuperFamilySSF541715.04E-21765IPR016177DNA-binding domain
PfamPF008471.2E-11755IPR001471AP2/ERF domain
PROSITE profilePS5103220.692764IPR001471AP2/ERF domain
PRINTSPR003671.6E-11819IPR001471AP2/ERF domain
PRINTSPR003671.6E-113046IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 119 aa     Download sequence    Send to blast
MARPQQRYRG VRQRHWGSWV SEIRHPLLKT RIWLGTFETA EDAARAYDEA ARIMCGPRVR  60
TNFPDKDAAP SSSFLSPALV AKLHRFNVAC GSQAGQQQDK DASTSSVGVD PRSPPAPFA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-17664463ATERF1
3gcc_A9e-17664463ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00526DAPTransfer from AT5G25190Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9749422e-82EU974942.1 Zea mays clone 461426 ethylene response factor 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020185052.11e-84ethylene-responsive transcription factor ERF003-like
RefseqXP_020191629.11e-84ethylene-responsive transcription factor ERF003-like
SwissprotQ94AW51e-46ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBLA0A453QXV62e-83A0A453QXV6_AEGTS; Uncharacterized protein
TrEMBLA0A453QY772e-83A0A453QY77_AEGTS; Uncharacterized protein
STRINGEMT003674e-84(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141835118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.13e-32ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]