PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_7DS_405F08A53.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | Nin-like | ||||||||
Protein Properties | Length: 199aa MW: 22215.3 Da PI: 4.6181 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 86.3 | 2.6e-27 | 141 | 190 | 3 | 52 |
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +++e +s+yF++pi++AA+eL+v+lTvLK++CR++GI+RWPhRk+k l Traes_7DS_405F08A53.1 141 RVLTFELVSQYFYMPITQAARELNVGLTVLKKKCRELGIPRWPHRKLKNL 190 6699*******************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 18.349 | 127 | 199 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 6.5E-22 | 143 | 189 | IPR003035 | RWP-RK domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence Send to blast |
CTGVHQKVLS SAFVFAKLIQ FFFSCTSFWP YGPSVWHDSY LLEDEALLCS LPFLSFGCQP 60 LCSNSPAVAQ SSSLQAPCLV PCDTGELDTS FDDDLLRCWE AIEQSDDSTE DSGKGLPLLC 120 YGEESGAASN AMRADRVRSE RVLTFELVSQ YFYMPITQAA RELNVGLTVL KKKCRELGIP 180 RWPHRKLKNL QTLINDVEV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP003509 | 1e-41 | AP003509.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0525F01. | |||
GenBank | AP003569 | 1e-41 | AP003569.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0425F05. | |||
GenBank | AP014962 | 1e-41 | AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012614 | 1e-41 | CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020164800.1 | 1e-116 | protein RKD4-like | ||||
TrEMBL | A0A3B6TGL9 | 1e-125 | A0A3B6TGL9_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A453R6E7 | 1e-125 | A0A453R6E7_AEGTS; Uncharacterized protein | ||||
STRING | Traes_7DS_405F08A53.1 | 1e-146 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4590 | 33 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18790.1 | 7e-25 | RWP-RK domain-containing protein |
Publications ? help Back to Top | |||
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