PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_7DS_4053B6E88.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

bHLH

Protein Properties

Length: 154aa MW: 16671.9 Da PI: 10.209

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_7DS_4053B6E88.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	22.7	1.7e-07	69	110	9	55
HHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 + RR+ri +++ L+el+P+ + K++ +++L kA+ Y+k +q Traes_7DS_4053B6E88.1 69 AKTRRERIGERLRVLQELVPNgN------KVDMVTMLDKAITYVKFMQ 110 589****************55......**************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	7.5E-11	60	118	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.119	60	109	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.23E-10	60	113	No hit	No description
SuperFamily	SSF47459	5.1E-13	61	122	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.1E-8	66	115	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	9.4E-5	69	110	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 154 aa Download sequence Send to blast
FEGCGGNGPP AASPSHKRPR ARAQAQQGTE QESTTLPKKQ CGGDRKSAVK PIKTSAATTS 60 AKDPQSDAAK TRRERIGERL RVLQELVPNG NKVDMVTMLD KAITYVKFMQ LQLTVLETDA 120 FWPAQGGEAP EISQVKAALD AIILSSSQQP RQWS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020158740.1	1e-108	transcription factor bHLH69-like
Swissprot	Q9FJ00	9e-43	BH086_ARATH; Putative transcription factor bHLH086
TrEMBL	A0A3B6THP5	1e-107	A0A3B6THP5_WHEAT; Uncharacterized protein
TrEMBL	A0A453RGE5	1e-107	A0A453RGE5_AEGTS; Uncharacterized protein
TrEMBL	M8BSM0	1e-107	M8BSM0_AEGTA; Putative transcription factor bHLH086
STRING	EMT09799	1e-108	(Aegilops tauschii)
STRING	Traes_7DS_4053B6E88.1	1e-110	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1412	38	117

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G37800.1	4e-45	RHD SIX-LIKE 1

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148] Kim CM,Dolan L ROOT HAIR DEFECTIVE SIX-LIKE Class I Genes Promote Root Hair Development in the Grass Brachypodium distachyon. PLoS Genet., 2016. 12(8): p. e1006211 [PMID:27494519] Feng Y, et al. Ethylene promotes root hair growth through coordinated EIN3/EIL1 and RHD6/RSL1 activity in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(52): p. 13834-13839 [PMID:29233944]