PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_7DS_3463CAE33.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

bZIP

Protein Properties

Length: 230aa MW: 25604.7 Da PI: 9.8482

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_7DS_3463CAE33.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.6	3.6e-10	77	125	5	53
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelk 53 kr +r NR +A rs +RK +i+eLe kv++L++e ++L +l +++ Traes_7DS_3463CAE33.1 77 KRVKRILANRQSAARSKERKMRYIQELEHKVQVLQTEATTLSAQLTMMQ 125 899**************************************99887765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	4.6E-18	73	137	IPR004827	Basic-leucine zipper domain
Pfam	PF07716	2.0E-9	74	126	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.473	75	138	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.45E-12	77	127	No hit	No description
Gene3D	G3DSA:1.20.5.170	2.5E-11	77	132	No hit	No description
CDD	cd14703	5.74E-19	78	127	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence Send to blast
MDSFMGKLNY ATGDDSPKLP LPSPSGGLSR SGSGSLDGGG AASLFGTEFA NGEFTEAEKK 60 KIMANERLAE IALTDPKRVK RILANRQSAA RSKERKMRYI QELEHKVQVL QTEATTLSAQ 120 LTMMQRDSGG LATQNNELKI RLQAMEQQAQ LRDALNEALT GEVQRLKLAT GEITDARMSK 180 AGLQQQMNSQ LIQMQQLQIQ QQQQQQSSQT QQAQQQQQQQ QQQQQQQSQQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269\|PubMed:14704272}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GU984378	0.0	GU984378.1 Triticum aestivum cultivar CB037 bZiP-like trancription factor (SF) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020153125.1	1e-158	transcription factor RF2a-like
Swissprot	Q6S4P4	9e-53	RF2B_ORYSJ; Transcription factor RF2b
TrEMBL	A0A3B6TEF8	1e-157	A0A3B6TEF8_WHEAT; Uncharacterized protein
TrEMBL	A0A453RQ39	1e-157	A0A453RQ39_AEGTS; Uncharacterized protein
STRING	Traes_7DS_3463CAE33.1	1e-160	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6247	36	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38900.3	1e-68	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Dai S,Zhang Z,Bick J,Beachy RN Essential role of the Box II cis element and cognate host factors in regulating the promoter of Rice tungro bacilliform virus. J. Gen. Virol., 2006. 87(Pt 3): p. 715-22 [PMID:16476995] Liu Y,Dai S,Beachy RN Role of the C-terminal domains of rice (Oryza sativa L.) bZIP proteins RF2a and RF2b in regulating transcription. Biochem. J., 2007. 405(2): p. 243-9 [PMID:17371296] Dai S, et al. Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease. Proc. Natl. Acad. Sci. U.S.A., 2008. 105(52): p. 21012-6 [PMID:19104064] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]