PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_7DS_2452C1E32.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

NAC

Protein Properties

Length: 356aa MW: 39748.2 Da PI: 7.8436

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_7DS_2452C1E32.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	170.3	6.2e-53	15	142	2	129
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 p+GfrFhPtd e+++ yL +kv +k ++ ++ evd++k+ePw+Lp+k+k +ekewyfFs++d+ky+tg r+nrat++gyWkatgkd Traes_7DS_2452C1E32.1 15 PQGFRFHPTDVEIITSYLVPKVLNKAFDP-IAVGEVDLNKCEPWELPEKAKMGEKEWYFFSQKDRKYPTGIRTNRATTAGYWKATGKD 101 89**********************999.78***********99999******************************** PP NAM 90 kevlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129 ke++++ +++l+g+kktLvfykgrap+g kt+Wvmheyrle Traes_7DS_2452C1E32.1 102 KEIFHHaTTSLIGMKKTLVFYKGRAPRGDKTNWVMHEYRLE 142 9867788**************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.36E-59	5	177	IPR003441	NAC domain
PROSITE profile	PS51005	55.93	14	177	IPR003441	NAC domain
Pfam	PF02365	2.1E-27	15	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence Send to blast
MADHLQVQRQ QLKFPQGFRF HPTDVEIITS YLVPKVLNKA FDPIAVGEVD LNKCEPWELP 60 EKAKMGEKEW YFFSQKDRKY PTGIRTNRAT TAGYWKATGK DKEIFHHATT SLIGMKKTLV 120 FYKGRAPRGD KTNWVMHEYR LESGKQGTPS LPTDITTATA INASSKEEYV VCRIFHKSTG 180 LKKVVMSSYA IPMPMSMGAE EQHGFLESGT LPPFMGYGAS SSLVPPSSLP ASSSYQLHDA 240 GARSSMMGSA VLPMMNDHYF GNHHYQNMAT PPRPLVSFYH HDPRQQQQQQ QHMIQMPMQM 300 QIGADEGLMI GVEPGSGPSS IVSQEDTLAR LSSNDVATTA DEISSVNMGT DGMWKY

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence Send to blast

MADHLQVQRQ QLKFPQGFRF HPTDVEIITS YLVPKVLNKA FDPIAVGEVD LNKCEPWELP  60
EKAKMGEKEW YFFSQKDRKY PTGIRTNRAT TAGYWKATGK DKEIFHHATT SLIGMKKTLV  120
FYKGRAPRGD KTNWVMHEYR LESGKQGTPS LPTDITTATA INASSKEEYV VCRIFHKSTG  180
LKKVVMSSYA IPMPMSMGAE EQHGFLESGT LPPFMGYGAS SSLVPPSSLP ASSSYQLHDA  240
GARSSMMGSA VLPMMNDHYF GNHHYQNMAT PPRPLVSFYH HDPRQQQQQQ QHMIQMPMQM  300
QIGADEGLMI GVEPGSGPSS IVSQEDTLAR LSSNDVATTA DEISSVNMGT DGMWKY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-48	11	183	14	171	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-48	11	183	14	171	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-48	11	183	14	171	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-48	11	183	14	171	NO APICAL MERISTEM PROTEIN
3swm_A	2e-48	11	183	17	174	NAC domain-containing protein 19
3swm_B	2e-48	11	183	17	174	NAC domain-containing protein 19
3swm_C	2e-48	11	183	17	174	NAC domain-containing protein 19
3swm_D	2e-48	11	183	17	174	NAC domain-containing protein 19
3swp_A	2e-48	11	183	17	174	NAC domain-containing protein 19
3swp_B	2e-48	11	183	17	174	NAC domain-containing protein 19
3swp_C	2e-48	11	183	17	174	NAC domain-containing protein 19
3swp_D	2e-48	11	183	17	174	NAC domain-containing protein 19
4dul_A	2e-48	11	183	14	171	NAC domain-containing protein 19
4dul_B	2e-48	11	183	14	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020167840.1	0.0	protein CUP-SHAPED COTYLEDON 2-like
Swissprot	Q9FLJ2	3e-75	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A3B6TAY4	0.0	A0A3B6TAY4_WHEAT; Uncharacterized protein
STRING	Traes_7DS_2452C1E32.1	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1452	37	121

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	9e-77	NAC domain containing protein 100

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]