PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7DS_197A95728.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HB-other
Protein Properties Length: 359aa    MW: 39568.3 Da    PI: 7.6344
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7DS_197A95728.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox253.3e-081375656
                           S--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHHH CS
               Homeobox  6 tftkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRakek 56
                           +ft+ ++ e+ee+ +   n  p+++ ++ LA+k            ++ +qV +WFqNrR+ ++
  Traes_7DS_197A95728.1 13 RFTHAEVAEMEEHLRHlnNAIPQRNVIQGLAEKFtasaaragkiPVQYKQVWNWFQNRRYSQR 75
                           69999*******999554999*********************99999*************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.84E-101277IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.4E-61377IPR009057Homeodomain-like
CDDcd000860.00591375No hitNo description
PfamPF000469.4E-61375IPR001356Homeobox domain
PROSITE profilePS500719.6371377IPR001356Homeobox domain
PfamPF167194.4E-40126252IPR032001SAWADEE domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MGRPPSSGGP AFRFTHAEVA EMEEHLRHLN NAIPQRNVIQ GLAEKFTASA ARAGKIPVQY  60
KQVWNWFQNR RYSQRARTPR GAPPPQGKML PTGAEEHHPA SFRAQGSSSS YPGSHSGKSP  120
SDGGQAEFEA KSARDGAWYD VAAFLSHRLF ETGDPEVKVR FSGFGPEEDE WINVRKCVRL  180
RSLPCESAEC VAVLPGDLIL CFQEGKEQAL YFDARVLDAQ RRRHDVRGCR CRFLVRYDHD  240
HSEEIVPLRK VCRRPETDFR LQILHASRAA ASADAQNVSP VEQKPQKAHK MMDVNTAEVT  300
VVRNPDQGGP SDKPAAPLPA APAGTHGDSV SDVQMGNVEV IPKVEAANEA HDDNMNVGA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iuq_A1e-451282566134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B1e-451282566134SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A1e-451282566134SHH1 SAWADEE
4iur_B1e-451282566134SHH1 SAWADEE
4iut_A1e-451282566134SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B1e-451282566134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A1e-451282566134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B1e-451282566134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A1e-451282566134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B1e-451282566134SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2529430.0AK252943.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf178n11, mRNA sequence.
GenBankAK3635050.0AK363505.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2016B04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020157952.10.0protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X1
RefseqXP_020157953.10.0protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X1
SwissprotQ8RWJ71e-117SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBLA0A3B6TDB20.0A0A3B6TDB2_WHEAT; Uncharacterized protein
STRINGTraes_7DS_197A95728.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41902948
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.11e-102sequence-specific DNA binding transcription factors;sequence-specific DNA binding
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]