PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7DS_1948388F8.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ARF
Protein Properties Length: 1066aa    MW: 118780 Da    PI: 6.4818
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7DS_1948388F8.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B364.51.6e-20104205199
                            EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                            f+k+lt sd++++g +++p++ ae++      +++++  ++l+ +d++   W++++i+r++++r++lt+GW+ F + ++L +gD+v+F
  Traes_7DS_1948388F8.2 104 FCKTLTASDTSTHGGFSVPRRAAERIfprldfSLQPPA-QELQARDLHDTIWTFRHIFRGQPKRHLLTTGWSLFISGKRLLAGDSVLF 190
                            99*****************************9777665.49*********************************************** PP

                            EE-SSSEE..EEEEE-S CS
                     B3  83 kldgrsefelvvkvfrk 99 
                               ++ +++l+++++r+
  Traes_7DS_1948388F8.2 191 I--RDAKQQLLLGIRRA 205
                            *..45677789999997 PP
2Auxin_resp118.45.9e-39230313183
             Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                            aahaa+++s F+++YnPras+seFv++++k++ka++ +++s+GmRf+m+fete+s +rr++Gt++g+sdldpvrW+nS+Wr+++
  Traes_7DS_1948388F8.2 230 AAHAAANNSQFTIFYNPRASPSEFVIPFAKYQKAVYgNQLSLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKNSQWRNIQ 313
                            79**********************************9********************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.44E-4193233IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.8E-3896219IPR015300DNA-binding pseudobarrel domain
CDDcd100179.72E-17103193No hitNo description
SMARTSM010192.0E-18104206IPR003340B3 DNA binding domain
PfamPF023621.8E-18104205IPR003340B3 DNA binding domain
PROSITE profilePS5086311.194104206IPR003340B3 DNA binding domain
PfamPF065071.4E-33230313IPR010525Auxin response factor
PfamPF023096.7E-99501038IPR033389AUX/IAA domain
PROSITE profilePS5174526.7659531037IPR000270PB1 domain
SuperFamilySSF542772.75E-79651032No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1066 aa     Download sequence    Send to blast
MMKELEMGAS DLARSFIGVV PVSCVQVAAS MRKDADAQIP SYPNLPSKLI CILHSVTMQS  60
DPDTDEVYAR MTLQPVSNVS QCDKEILLAS ELALKQNKPQ TEFFCKTLTA SDTSTHGGFS  120
VPRRAAERIF PRLDFSLQPP AQELQARDLH DTIWTFRHIF RGQPKRHLLT TGWSLFISGK  180
RLLAGDSVLF IRDAKQQLLL GIRRANRQPT NLSSSVLSSD SMHIGVLAAA AHAAANNSQF  240
TIFYNPRASP SEFVIPFAKY QKAVYGNQLS LGMRFRMMFE TEESGTRRYM GTITGISDLD  300
PVRWKNSQWR NIQVAWDEAA PSERRTRVSL WDIEPVIAPF FIYPTPLFTA KRARQPGMID  360
DDTSGMDNLF KRTMPWLGEE ICKKDMNTQN SIVPGLNIAQ SLQWMNMQQN LSLAGTVMQP  420
ELLNSLAGKH VQNLSAADIS RQISFQPQFL QQNNIQFNTS LLPQQNQQAE QLAKAIATPN  480
QLGNIMVPQK VDQDCNSDQK QHTVTQSVQG SQANLNVTQP EHVVQAQFQQ PRVILQAQLQ  540
QQQPLVQSHT VFQGGLQQIQ VLQQQQPHLQ QQLQQQQPQH HQQVQHSVQE QQQMKIQPVH  600
VSSDANMNTQ LSDHQMKLQL LKALHSQQHL TMEQQKMLFD LQQQVVNSQS DPQQCVQGAT  660
QTVGFHNSNT IQYATQQKAQ SHQPIEDSPR GTIPVAKSDI VTSMGASSLN GTGRMQSVRT  720
DNVPSSSTSP STTTNHVLLQ SIPSSSKNQS LPTAAKTSQS SVVLGPTIEQ EMKSYQSVKP  780
TIMVPKMIEQ GPATERDYIN NPHMDYLDTS SSATSVCLSQ ADGSLQQNFP SSSFDQHQLL  840
RDTAPDSEFE ISDPTNNVLF GVNIDGQLGL PLNADALIAN SIENDKFMDE MAGNGISNYI  900
SSKDSQQELS SSMISHSLGV ADMGFNSIDS AINDPSFLNR NSRAPAPAHQ CMRTYTKVHK  960
RGAVGRSIDM NRYSGYDELK HDIARMFGIE GQLGDQSRVG WKLVYEDHEK DVLLVGDDPW  1020
EDFLNCVRCI RILSPQEEMQ MRLVGDFGDG FLPNQACSSS DGGQPW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1442633483388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin under dark condition. Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3746130.0AK374613.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3070K03.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020151212.10.0auxin response factor 21-like
SwissprotQ6YZW00.0ARFU_ORYSJ; Auxin response factor 21
TrEMBLA0A3B6TPZ40.0A0A3B6TPZ4_WHEAT; Auxin response factor
STRINGTraes_7DS_1948388F8.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140935106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]