PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_7DS_0A968BA86.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | C3H | ||||||||
Protein Properties | Length: 428aa MW: 48208.1 Da PI: 8.5132 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 27.7 | 4.5e-09 | 24 | 44 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C f++r G C+yG+rC++ H+ Traes_7DS_0A968BA86.2 24 VCTFYQR-GSCSYGNRCRYDHV 44 5999999.*************7 PP | |||||||
2 | zf-CCCH | 21.6 | 3.9e-07 | 155 | 177 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 +++C+ fa++G C+yG+ C+ +Hg Traes_7DS_0A968BA86.2 155 MPICS-FAAGGNCPYGEECPHMHG 177 68999.**************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 8.803 | 1 | 18 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.267 | 19 | 46 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.1E-5 | 21 | 43 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.5E-4 | 21 | 45 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.6E-6 | 24 | 44 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.0E-4 | 24 | 43 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.015 | 152 | 178 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 11.76 | 152 | 179 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.9E-4 | 155 | 177 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF57850 | 5.44E-13 | 210 | 285 | No hit | No description |
Gene3D | G3DSA:3.30.40.10 | 1.2E-9 | 214 | 280 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
Pfam | PF13639 | 4.3E-7 | 220 | 279 | IPR001841 | Zinc finger, RING-type |
CDD | cd00162 | 0.00104 | 220 | 280 | No hit | No description |
SMART | SM00184 | 2.9E-7 | 221 | 278 | IPR001841 | Zinc finger, RING-type |
PROSITE profile | PS50089 | 12.297 | 221 | 279 | IPR001841 | Zinc finger, RING-type |
PROSITE pattern | PS00518 | 0 | 245 | 254 | IPR017907 | Zinc finger, RING-type, conserved site |
SMART | SM00356 | 0.01 | 308 | 336 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.648 | 308 | 337 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 428 aa Download sequence Send to blast |
MHGACLKGEY CEFSHDWSDQ ANNVCTFYQR GSCSYGNRCR YDHVKVSRNN PVPPLPSSST 60 ATRNSPVRLP PSSSTATHVA STSPQLLSSG RPLHLGHQTN SSNQRQQISM DKLAVSESKP 120 AWRNEVQLDS VSEDGIGWSS IQTAQNQTSM KLADMPICSF AAGGNCPYGE ECPHMHGDLC 180 AFCGKMCLHP YRPDERQEHI KLCEKNHKRL EALKRSQEIE CSVCLDRVLS KPTAAERKFG 240 LLSECDHPFC ISCIRNWRGN SPTSGMDVNS ALRACPICRK LSYYVIPSVL WYFSKEEKLE 300 ITENYKAKLK SIDCKYFDFG TGTCPFGTSC FYKHAYRDGR LEEVVLRHLD CDDGSTLIAK 360 NIRVVRLPRP VASLGTCGCI YIELIRRHQF KSRHLGKLLL YLQFIGGCFV AKHTKKIRSS 420 LPDTWMTL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | E3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK248188 | 0.0 | AK248188.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf156g01, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020148368.1 | 0.0 | E3 ubiquitin-protein ligase makorin-like isoform X1 | ||||
Refseq | XP_020148370.1 | 0.0 | E3 ubiquitin-protein ligase makorin-like isoform X2 | ||||
Swissprot | Q5ZA07 | 0.0 | C3H41_ORYSJ; E3 ubiquitin-protein ligase makorin | ||||
TrEMBL | A0A453REZ7 | 0.0 | A0A453REZ7_AEGTS; Uncharacterized protein | ||||
STRING | Traes_7DS_0A968BA86.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5326 | 33 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G08505.2 | 1e-133 | C3H family protein |
Publications ? help Back to Top | |||
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