PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7DS_0536E73E5.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 204aa    MW: 22383.4 Da    PI: 7.2732
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7DS_0536E73E5.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.31.2e-073312255
                           HHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH 22 eLrellPkaskapskKlsKaeiLekAveYIksLq 55
                            L++l+P++      K +Ka++L +A+eY+k+Lq
  Traes_7DS_0536E73E5.2  3 ALQSLIPNS-----NKTDKASMLDEAIEYLKQLQ 31
                           799999997.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.106.8E-11141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.131130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.88E-8135No hitNo description
SuperFamilySSF474591.18E-10241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.0E-5331IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MKALQSLIPN SNKTDKASML DEAIEYLKQL QLQVQMLSMR NGVYLNPSYL SGALEPVQAS  60
QMFAALGVSG RNVAAPSSGA VAPPVNQSSG ARHSFDLMNS PQQNQPQPLV LPSCPKTTIP  120
EPPFHLEPSQ SHLQSFQLPE SSEMMLRGEL MLKHHLTSAQ DRADPPGNKM NSLRQESSML  180
NHFDGCSRSK EQSHDMVPAN TRHV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3747870.0AK374787.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3076F24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020169799.11e-145transcription factor PIF3-like
RefseqXP_020169800.11e-145transcription factor PIF3-like
TrEMBLA0A3B6TEL81e-147A0A3B6TEL8_WHEAT; Uncharacterized protein
STRINGTraes_7DS_0536E73E5.21e-147(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33363776
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.19e-25bHLH family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]