PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7DL_FD9C65DC01.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 106aa    MW: 11049.4 Da    PI: 10.5435
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7DL_FD9C65DC01.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.51.3e-074992243
                            SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHH CS
         Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksr 43
                            g W++ Ed  l++a k+++++   +W+++a+ ++ g+t   c  r
  Traes_7DL_FD9C65DC01.1 49 GGWSAGEDRSLLNALKEFPKDtamRWEKVAAAVP-GKTKAGCMKR 92
                            56********************************.***9988776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.6E-44799IPR001005SANT/Myb domain
SuperFamilySSF466892.42E-104797IPR009057Homeodomain-like
PfamPF002497.3E-74992IPR001005SANT/Myb domain
PROSITE profilePS500906.8644997IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.8E-64997IPR009057Homeodomain-like
CDDcd001671.36E-55197No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0005783Cellular Componentendoplasmic reticulum
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 106 aa     Download sequence    Send to blast
ESVIRAAKSG GAAAAGGSFE QFLRKRKPLD PRAGAADADT GGNAGGGDGG WSAGEDRSLL  60
NALKEFPKDT AMRWEKVAAA VPGKTKAGCM KRVTELKRDF RSSKEP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12227LRKRKP
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of root hair development, possibly through auxin signaling. Its endoplasmic reticulum membrane localization is not compatible with its transcription factor activity in the nucleus. May be cleaved to target the nucleus. {ECO:0000269|PubMed:21477080}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21477080}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF9519381e-165JF951938.1 Aegilops speltoides clone TaMYB55 MYB-related protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020170202.19e-68uncharacterized protein F54F2.9
RefseqXP_020170203.19e-68uncharacterized protein F54F2.9
SwissprotQ9ASQ27e-31MAMYB_ARATH; Transcription factor MAMYB
TrEMBLA0A3B6TSE42e-66A0A3B6TSE4_WHEAT; Uncharacterized protein
TrEMBLA0A453RX102e-66A0A453RX10_AEGTS; Uncharacterized protein
TrEMBLM8BRX42e-66M8BRX4_AEGTA; DnaJ homolog subfamily C member 2
STRINGEMT277303e-67(Aegilops tauschii)
STRINGTraes_7DL_FD9C65DC01.17e-69(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP103112731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45420.12e-23MYB_related family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]