PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_7DL_FAF2AE9FB.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB | ||||||||
Protein Properties | Length: 320aa MW: 36696.9 Da PI: 12.4181 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.9 | 1.5e-15 | 24 | 71 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed l+d v+++G g+W+++ r+ g+ R++k+c++rw ++l Traes_7DL_FAF2AE9FB.1 24 KGPWTQAEDRVLLDHVRRHGEGNWNAVRRETGLQRCGKSCRLRWANHL 71 79******************************************9986 PP | |||||||
2 | Myb_DNA-binding | 47.5 | 4.2e-15 | 77 | 120 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++++eE+ l+++++ + G++ W++I+ +++ gRt++++k++w++ Traes_7DL_FAF2AE9FB.1 77 KGPFSPEEERLILRLHGLIGNK-WARISTHLP-GRTDNEVKNFWNT 120 79********************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.025 | 19 | 71 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.03E-30 | 21 | 118 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.4E-12 | 23 | 73 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.9E-22 | 25 | 78 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.54E-11 | 26 | 71 | No hit | No description |
Pfam | PF13921 | 1.4E-14 | 27 | 86 | No hit | No description |
PROSITE pattern | PS00175 | 0 | 39 | 48 | IPR001345 | Phosphoglycerate/bisphosphoglycerate mutase, active site |
PROSITE profile | PS51294 | 25.6 | 72 | 126 | IPR017930 | Myb domain |
SMART | SM00717 | 2.8E-15 | 76 | 124 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.6E-24 | 79 | 125 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.65E-11 | 79 | 122 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008152 | Biological Process | metabolic process | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003824 | Molecular Function | catalytic activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 320 aa Download sequence Send to blast |
MATAMDTTVP RSGLGEGGGG GLKKGPWTQA EDRVLLDHVR RHGEGNWNAV RRETGLQRCG 60 KSCRLRWANH LRPNLRKGPF SPEEERLILR LHGLIGNKWA RISTHLPGRT DNEVKNFWNT 120 RLKRRQRAGQ SLYPPDVERE IAFMRAQNIN PFADADGNTA ASPFSDPFAL PPRPPSSTKP 180 ASHSHSSPLI NQHYPLLNEM QGMQMRHHAV QHAHPQPAFH HHHGGIRLPX XXXXXXXXXX 240 XXXXXXXXRR SRRPARGAAA RRRRTSTPPS QPWRVQGRLH ARSHVRRRLE RERQRRHLAV 300 PSRSRRPGSA PWREMGLPRR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-27 | 22 | 125 | 5 | 107 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK373804 | 0.0 | AK373804.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3044A21. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020185931.1 | 1e-152 | myb-related protein Zm1-like | ||||
TrEMBL | A0A3B6TWL9 | 1e-151 | A0A3B6TWL9_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A453SWD1 | 1e-151 | A0A453SWD1_AEGTS; Uncharacterized protein | ||||
TrEMBL | N1QUP9 | 1e-149 | N1QUP9_AEGTA; Transcription factor GAMYB | ||||
STRING | Traes_7DL_FAF2AE9FB.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12397 | 26 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06100.1 | 3e-57 | myb domain protein 33 |
Publications ? help Back to Top | |||
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