PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7DL_EB22D3FCE.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C3H
Protein Properties Length: 377aa    MW: 42344.1 Da    PI: 10.0887
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7DL_EB22D3FCE.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.52.4e-081540127
                           --S---SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                           +kt+lC  ++r G C++G++C FaHg+
  Traes_7DL_EB22D3FCE.2 15 FKTKLCALWRR-GPCPRGPSCGFAHGE 40
                           69*********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.8E-14947IPR000571Zinc finger, CCCH-type
SMARTSM003567.6E-61440IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.7041441IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.24E-71445IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-61540IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MREMLDPPPR RGPAFKTKLC ALWRRGPCPR GPSCGFAHGE GELRTPPPHS TFPPRAGPGG  60
RDHRIHEFRG RPERRNSPRR RYSPDRDTRG HLFRNKMPPR SQGSSQSRSP IRKSERRPKK  120
KVDGGKSDSS GSFNTSENED RKKDDIHSSS DEKDDGEAQL KQIALDMKAL HEDKSKLQMI  180
LDKKIEEAGI ISGRVDDLES QLNKEKEDCE RMTSKIKKLI KAYGRYVKAQ DDLKRSQGRF  240
ERLADSLASD SLKSGTKEQG SSVNAGNDDP YNAYEMSPDD QRQKNGSAAR KRSAALSTSE  300
EEKTGKKRRV NGDDMVHMSG KYRSEDALES LKNSKGTESL KKLGEDGNND EINVISSGND  360
FTDRVSIFLT ADQPIIF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1289308RKRSAALSTSEEEKTGKKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3608990.0AK360899.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1127P10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020157415.10.0zinc finger CCCH domain-containing protein 13-like isoform X1
SwissprotQ6H7U21e-103C3H13_ORYSJ; Zinc finger CCCH domain-containing protein 13
TrEMBLA0A453SUQ20.0A0A453SUQ2_AEGTS; Uncharacterized protein
STRINGTraes_7DL_EB22D3FCE.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38822943
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21810.12e-20C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]