PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7DL_D19D5E59C.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C3H
Protein Properties Length: 361aa    MW: 38398.8 Da    PI: 7.2988
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7DL_D19D5E59C.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH314.2e-1099124127
                            --S---SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                            +kt+lC+ f++ GtC+y  +C+FaHg+
  Traes_7DL_D19D5E59C.1  99 FKTKLCCKFRA-GTCPYVTNCNFAHGM 124
                            69*********.*************95 PP

2zf-CCCH18.24.6e-06172197126
                            --S---SGGGGTS--TTTTT-SS-SS CS
                zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                            yk + C+ f+    C+yGd C+F H+
  Traes_7DL_D19D5E59C.1 172 YKGRHCKKFYTEEGCPYGDACTFLHD 197
                            78888********************7 PP

3zf-CCCH43.45.7e-14240265126
                            --S---SGGGGTS--TTTTT-SS-SS CS
                zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                            +kt++C+ +  tG+C++G++C+FaHg
  Traes_7DL_D19D5E59C.1 240 WKTRICNKWEMTGYCPFGSKCHFAHG 265
                            8************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.9E-1496131IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-896129IPR000571Zinc finger, CCCH-type
SMARTSM003560.001498124IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.02898125IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-799124IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-7170199IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-9170199IPR000571Zinc finger, CCCH-type
SMARTSM003560.3171198IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.629171199IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.32E-10236270IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-17236269IPR000571Zinc finger, CCCH-type
SMARTSM003567.1E-9239266IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.422239267IPR000571Zinc finger, CCCH-type
PfamPF006426.5E-11240265IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MDYTNAIHII PDAAGPESWA NSAAPPGGDS GIWATEDDYS QWNGEQGLSG GGYGGXXXPH  60
SRAGSEQPPP GKKPRGSGPS GGGDAGSTSK SRAIGKMFFK TKLCCKFRAG TCPYVTNCNF  120
AHGMEELRKP PPNWQEIVAA HEEATEQREE HQIPIMTSSN VVPGDSVSGR AYKGRHCKKF  180
YTEEGCPYGD ACTFLHDEQS KARESVAISL SPSVGGGSYN SAAAAAASPN GPTILKPSNW  240
KTRICNKWEM TGYCPFGSKC HFAHGAAELH KYGGGLVDID GRDIASTPDS KQAAASSKLP  300
VETAAASTAV PPHADVYHLG SQSQRSALAS QRSGQLQRPI QKWKGPDKIS RIYGDWIDET  360
D
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3733070.0AK373307.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3026K08.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020198349.10.0zinc finger CCCH domain-containing protein 56
SwissprotQ84UQ30.0C3H56_ORYSJ; Zinc finger CCCH domain-containing protein 56
TrEMBLA0A3B6RGK70.0A0A3B6RGK7_WHEAT; Uncharacterized protein
TrEMBLA0A446XHL60.0A0A446XHL6_TRITD; Uncharacterized protein
STRINGTraes_7DL_D19D5E59C.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP66153853
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.11e-107C3H family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]