PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_7DL_D19D5E59C.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | C3H | ||||||||
Protein Properties | Length: 361aa MW: 38398.8 Da PI: 7.2988 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 31 | 4.2e-10 | 99 | 124 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC+ f++ GtC+y +C+FaHg+ Traes_7DL_D19D5E59C.1 99 FKTKLCCKFRA-GTCPYVTNCNFAHGM 124 69*********.*************95 PP | |||||||
2 | zf-CCCH | 18.2 | 4.6e-06 | 172 | 197 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 yk + C+ f+ C+yGd C+F H+ Traes_7DL_D19D5E59C.1 172 YKGRHCKKFYTEEGCPYGDACTFLHD 197 78888********************7 PP | |||||||
3 | zf-CCCH | 43.4 | 5.7e-14 | 240 | 265 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + tG+C++G++C+FaHg Traes_7DL_D19D5E59C.1 240 WKTRICNKWEMTGYCPFGSKCHFAHG 265 8************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 1.9E-14 | 96 | 131 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.79E-8 | 96 | 129 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0014 | 98 | 124 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.028 | 98 | 125 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.2E-7 | 99 | 124 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.96E-7 | 170 | 199 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.1E-9 | 170 | 199 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.3 | 171 | 198 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.629 | 171 | 199 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.32E-10 | 236 | 270 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.9E-17 | 236 | 269 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.1E-9 | 239 | 266 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.422 | 239 | 267 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.5E-11 | 240 | 265 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 361 aa Download sequence Send to blast |
MDYTNAIHII PDAAGPESWA NSAAPPGGDS GIWATEDDYS QWNGEQGLSG GGYGGXXXPH 60 SRAGSEQPPP GKKPRGSGPS GGGDAGSTSK SRAIGKMFFK TKLCCKFRAG TCPYVTNCNF 120 AHGMEELRKP PPNWQEIVAA HEEATEQREE HQIPIMTSSN VVPGDSVSGR AYKGRHCKKF 180 YTEEGCPYGD ACTFLHDEQS KARESVAISL SPSVGGGSYN SAAAAAASPN GPTILKPSNW 240 KTRICNKWEM TGYCPFGSKC HFAHGAAELH KYGGGLVDID GRDIASTPDS KQAAASSKLP 300 VETAAASTAV PPHADVYHLG SQSQRSALAS QRSGQLQRPI QKWKGPDKIS RIYGDWIDET 360 D |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK373307 | 0.0 | AK373307.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3026K08. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020198349.1 | 0.0 | zinc finger CCCH domain-containing protein 56 | ||||
Swissprot | Q84UQ3 | 0.0 | C3H56_ORYSJ; Zinc finger CCCH domain-containing protein 56 | ||||
TrEMBL | A0A3B6RGK7 | 0.0 | A0A3B6RGK7_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446XHL6 | 0.0 | A0A446XHL6_TRITD; Uncharacterized protein | ||||
STRING | Traes_7DL_D19D5E59C.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6615 | 38 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32360.1 | 1e-107 | C3H family protein |
Publications ? help Back to Top | |||
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