PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7DL_D05DA373C.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NAC
Protein Properties Length: 382aa    MW: 42251.1 Da    PI: 9.7223
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7DL_D05DA373C.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM156.89.1e-49351612128
                    NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                            +pGfrFhPt+eel+ +yL++kv+gk++++ + i++vd+y+++PwdLp+ ++ ++kew+f+++rd+ky++g+r+nr+t sgyWkatg d
  Traes_7DL_D05DA373C.2  35 MPGFRFHPTEEELIEFYLRRKVDGKRFNI-DLIASVDLYRYDPWDLPALASIGDKEWFFYVPRDRKYRNGDRPNRVTPSGYWKATGAD 121
                            79***************************.99***************888889*********************************** PP

                    NAM  90 kevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                            + v++  +++ +glkktLvfy g+apkg +++W+m+eyrl
  Traes_7DL_D05DA373C.2 122 RMVKVVeGNRSIGLKKTLVFYVGKAPKGLRSSWIMNEYRL 161
                            *9988757888***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.72E-5733181IPR003441NAC domain
PROSITE profilePS5100556.07434181IPR003441NAC domain
PfamPF023652.0E-2436161IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MTRSRPTTTM GGSVPDHHQQ QHDGEVDGGH VETVMPGFRF HPTEEELIEF YLRRKVDGKR  60
FNIDLIASVD LYRYDPWDLP ALASIGDKEW FFYVPRDRKY RNGDRPNRVT PSGYWKATGA  120
DRMVKVVEGN RSIGLKKTLV FYVGKAPKGL RSSWIMNEYR LPHGETERYQ KEISLCRVYK  180
RPGIDDNFHL TGTTTRSPGS RAAATRHSTA AHRTSVATHR QQPPVFVEGG GHHSSSALKA  240
YNAHTTQGTN AAGTMASLSA AAXAPPPAMF RSTASVASLS STTSTEEDGT SLYHHHLKGH  300
NNPAVMQLHS STHATLLNTN SSAMATIPID ELSRAIGSYS QASNPNQPTA PLQGPLLNFP  360
SLEKIWDWNP LLESPKVCTS FK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-533618119165NO APICAL MERISTEM PROTEIN
1ut4_B3e-533618119165NO APICAL MERISTEM PROTEIN
1ut7_A3e-533618119165NO APICAL MERISTEM PROTEIN
1ut7_B3e-533618119165NO APICAL MERISTEM PROTEIN
3swm_A4e-533618122168NAC domain-containing protein 19
3swm_B4e-533618122168NAC domain-containing protein 19
3swm_C4e-533618122168NAC domain-containing protein 19
3swm_D4e-533618122168NAC domain-containing protein 19
3swp_A4e-533618122168NAC domain-containing protein 19
3swp_B4e-533618122168NAC domain-containing protein 19
3swp_C4e-533618122168NAC domain-containing protein 19
3swp_D4e-533618122168NAC domain-containing protein 19
4dul_A3e-533618119165NAC domain-containing protein 19
4dul_B3e-533618119165NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6720690.0AY672069.1 Hordeum vulgare subsp. vulgare NAC transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020156931.10.0NAC domain-containing protein 35-like
TrEMBLA0A3B6TT420.0A0A3B6TT42_WHEAT; Uncharacterized protein
TrEMBLA0A453S2F20.0A0A453S2F2_AEGTS; Uncharacterized protein
STRINGTraes_7DL_D05DA373C.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP77063650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.21e-92NAC domain containing protein 35
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]