PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_7DL_CA3975AFD.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | bHLH | ||||||||
Protein Properties | Length: 55aa MW: 6216.48 Da PI: 11.1351 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 14.4 | 7.1e-05 | 7 | 42 | 15 | 55 |
HHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 15 riNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+++ + +L+ ++P +++ ++L +Av+Y+ksL+ Traes_7DL_CA3975AFD.1 7 RMKKMMKTLKGIIPGG-----DRMDTPAVLDEAVRYLKSLK 42 78899999*****994.....59****************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 10.385 | 1 | 41 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 0.0051 | 1 | 47 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.1E-6 | 3 | 48 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 9.03E-9 | 5 | 49 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 55 aa Download sequence Send to blast |
GERKKERMKK MMKTLKGIIP GGDRMDTPAV LDEAVRYLKS LKVEVKKLGV RGSRS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP096103 | 3e-70 | FP096103.1 Phyllostachys edulis cDNA clone: bphyem207a01, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020160908.1 | 1e-28 | transcription factor bHLH144-like | ||||
Refseq | XP_020160909.1 | 1e-28 | transcription factor bHLH144-like | ||||
Refseq | XP_020160910.1 | 1e-28 | transcription factor bHLH144-like | ||||
Refseq | XP_020160912.1 | 1e-28 | transcription factor bHLH144-like | ||||
TrEMBL | M0VZF2 | 3e-28 | M0VZF2_HORVV; Uncharacterized protein | ||||
STRING | MLOC_38887.1 | 6e-29 | (Hordeum vulgare) | ||||
STRING | Traes_7DL_CA3975AFD.1 | 4e-30 | (Triticum aestivum) | ||||
STRING | TRIUR3_23163-P1 | 3e-28 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2083 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G29950.2 | 2e-12 | bHLH family protein |
Publications ? help Back to Top | |||
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