PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_7DL_BFADB408C.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

GATA

Protein Properties

Length: 359aa MW: 38576.9 Da PI: 8.5715

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_7DL_BFADB408C.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	54.7	1.4e-17	177	210	1	34
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 Cs C+ttkTplWR+gp g+k+LCnaCG+++rk + Traes_7DL_BFADB408C.1 177 CSDCNTTKTPLWRSGPCGPKSLCNACGIRQRKAR 210 *******************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57716	1.85E-12	170	211	No hit	No description
SMART	SM00401	2.0E-15	171	222	IPR000679	Zinc finger, GATA-type
PROSITE profile	PS50114	12.453	175	207	IPR000679	Zinc finger, GATA-type
Gene3D	G3DSA:3.30.50.10	5.6E-14	175	210	IPR013088	Zinc finger, NHR/GATA-type
CDD	cd00202	2.56E-14	176	213	No hit	No description
Pfam	PF00320	2.7E-15	177	210	IPR000679	Zinc finger, GATA-type
PROSITE pattern	PS00344	0	177	202	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0007623	Biological Process	circadian rhythm
GO:0009416	Biological Process	response to light stimulus
GO:0009740	Biological Process	gibberellic acid mediated signaling pathway
GO:0009910	Biological Process	negative regulation of flower development
GO:0010187	Biological Process	negative regulation of seed germination
GO:0010255	Biological Process	glucose mediated signaling pathway
GO:0010380	Biological Process	regulation of chlorophyll biosynthetic process
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence Send to blast
MSTIYMSQLS TAFPLMEEDH HQDHHQGHFQ AFTLPKDPPI LFPFVISSSS PSDNSSTLSY 60 GSDQHLMQHH AMLDQPQHMI GGSSSVFSTP FPTVESIRDD MIERSYSYDP YDMEKLQDTS 120 GSLKIGKWTA PAPAAKMRIT RKTSDPGVKK PRKRAQAYED HGHMGGMNQA LGVIRTCSDC 180 NTTKTPLWRS GPCGPKSLCN ACGIRQRKAR RAMMATGAAP VTDVGAAKAA APGDAAVTVH 240 PPKVKKEKRA ADVDRSLPFK KRCKVVQDHA ATNAAAPTTV EAAAEPPVVV TTTTTTAATP 300 ARDLVDTIGV NWSKSPTGAP AAACFRPSPA PFAVPVPVQD EITDAAMLLM TLSCELVRS

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence Send to blast

MSTIYMSQLS TAFPLMEEDH HQDHHQGHFQ AFTLPKDPPI LFPFVISSSS PSDNSSTLSY  60
GSDQHLMQHH AMLDQPQHMI GGSSSVFSTP FPTVESIRDD MIERSYSYDP YDMEKLQDTS  120
GSLKIGKWTA PAPAAKMRIT RKTSDPGVKK PRKRAQAYED HGHMGGMNQA LGVIRTCSDC  180
NTTKTPLWRS GPCGPKSLCN ACGIRQRKAR RAMMATGAAP VTDVGAAKAA APGDAAVTVH  240
PPKVKKEKRA ADVDRSLPFK KRCKVVQDHA ATNAAAPTTV EAAAEPPVVV TTTTTTAATP  300
ARDLVDTIGV NWSKSPTGAP AAACFRPSPA PFAVPVPVQD EITDAAMLLM TLSCELVRS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters (By similarity). Influences the expression of nuclear encoded chloroplast-targeted genes. Regulates chloroplast development and promotes chlorophyll accumulation. Modulates plant architecture (e.g. height, length and width of leaf blades, and flowering tillers production) and represses tillering, probably by modulating number of cells. Promotes senescence. Involved in grain filling, panicle development and starch production (PubMed:23548780). {ECO:0000250\|UniProtKB:Q9SZI6, ECO:0000269\|PubMed:23548780}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by light, nitrogen, and cytokinin (benzyladenine) treatments, but repressed by darkness and gibberellin (GA). {ECO:0000269\|PubMed:23548780}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK360901	0.0	AK360901.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1128A09.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020170490.1	0.0	putative GATA transcription factor 22
Swissprot	Q6YW48	1e-75	CGA1_ORYSJ; Protein CYTOKININ-RESPONSIVE GATA TRANSCRIPTION FACTOR 1
TrEMBL	A0A3B6TMD1	0.0	A0A3B6TMD1_WHEAT; Uncharacterized protein
STRING	Traes_7DL_BFADB408C.1	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1893	38	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56860.1	4e-19	GATA family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148] Behringer C,Schwechheimer C B-GATA transcription factors - insights into their structure, regulation, and role in plant development. Front Plant Sci, 2015. 6: p. 90 [PMID:25755661]