PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_7DL_BF9C602A5.2

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C2H2

Protein Properties

Length: 358aa MW: 39094.5 Da PI: 8.4103

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_7DL_BF9C602A5.2	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.7	0.0008	106	119	1	14
EEETTTTEEESSHH CS zf-C2H2 1 ykCpdCgksFsrks 14 +kC++C+ksF++k+ Traes_7DL_BF9C602A5.2 106 FKCSKCNKSFTSKD 119 89*********987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF53335	4.96E-33	151	350	IPR029063	S-adenosyl-L-methionine-dependent methyltransferase
Gene3D	G3DSA:3.40.50.150	4.8E-34	168	347	IPR029063	S-adenosyl-L-methionine-dependent methyltransferase
CDD	cd02440	3.63E-13	188	294	No hit	No description
Pfam	PF08241	1.4E-20	189	289	IPR013216	Methyltransferase type 11

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0032259	Biological Process	methylation
GO:0008168	Molecular Function	methyltransferase activity

Sequence ? help Back to Top
Protein Sequence Length: 358 aa Download sequence Send to blast
MDAVESSSSP YSPPSLRHKL RTTVCGCFGS PSLPGSGAER PHTGSVRAGQ VEATRGGHGG 60 VQFQEIKTEL NDTPKTEVFA CPVCYEPLIR KGPPGMNLPA IYRSGFKCSK CNKSFTSKDV 120 FLDLTVTSGM KEYSELKPAR TELFRSPLVS FLYERGWRQN FNRSGFPGRD EEFQMAQDYF 180 KPVAGGILVD VSCGSGLFSR KFASSGAYSA VIALDFSENM LRQCYDYIRQ EETPMNTNLA 240 LVRADISRLP FASCSIDAIH AGAAIHCWPS PSNAIAEISR VLKPGGVFVA TTFLSTPTNS 300 GPFSIDALRP LRQIVGPVNS SYNFFTEGEL KDLCISCGLV NYSSKVQRSF IMFSGQKP

Sequence ? help Back to Top

Protein Sequence Length: 358 aa Download sequence Send to blast

MDAVESSSSP YSPPSLRHKL RTTVCGCFGS PSLPGSGAER PHTGSVRAGQ VEATRGGHGG  60
VQFQEIKTEL NDTPKTEVFA CPVCYEPLIR KGPPGMNLPA IYRSGFKCSK CNKSFTSKDV  120
FLDLTVTSGM KEYSELKPAR TELFRSPLVS FLYERGWRQN FNRSGFPGRD EEFQMAQDYF  180
KPVAGGILVD VSCGSGLFSR KFASSGAYSA VIALDFSENM LRQCYDYIRQ EETPMNTNLA  240
LVRADISRLP FASCSIDAIH AGAAIHCWPS PSNAIAEISR VLKPGGVFVA TTFLSTPTNS  300
GPFSIDALRP LRQIVGPVNS SYNFFTEGEL KDLCISCGLV NYSSKVQRSF IMFSGQKP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK360398	0.0	AK360398.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1117E13.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020189261.1	0.0	uncharacterized methyltransferase At2g41040, chloroplastic-like
Swissprot	Q0WPT7	1e-136	Y2104_ARATH; Uncharacterized methyltransferase At2g41040, chloroplastic
TrEMBL	A0A3B6TP89	0.0	A0A3B6TP89_WHEAT; Uncharacterized protein
TrEMBL	M8BMC3	0.0	M8BMC3_AEGTA; Putative methyltransferase
STRING	EMT07919	0.0	(Aegilops tauschii)
STRING	Traes_7DL_BF9C602A5.2	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1920	3	5

Publications ? help Back to Top
Vidi PA, et al. Tocopherol cyclase (VTE1) localization and vitamin E accumulation in chloroplast plastoglobule lipoprotein particles. J. Biol. Chem., 2006. 281(16): p. 11225-34 [PMID:16414959] Ytterberg AJ,Peltier JB,van Wijk KJ Protein profiling of plastoglobules in chloroplasts and chromoplasts. A surprising site for differential accumulation of metabolic enzymes. Plant Physiol., 2006. 140(3): p. 984-97 [PMID:16461379] Lundquist PK, et al. The functional network of the Arabidopsis plastoglobule proteome based on quantitative proteomics and genome-wide coexpression analysis. Plant Physiol., 2012. 158(3): p. 1172-92 [PMID:22274653] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]