PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7DL_B8D140CC3.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family FAR1
Protein Properties Length: 455aa    MW: 54049.9 Da    PI: 7.7632
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7DL_B8D140CC3.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR184.51.7e-2620114191
                   FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkek.dgkwevtklele 84 
                            +fYn+YA e GFsvrks+ +    n+ i+ r+ vCs++g+ree++ k   ++++rr+r+ tr+gC+akl++++++ +g+w v+++  e
  Traes_7DL_B8D140CC3.1  20 EFYNKYALEKGFSVRKSYVEWDGSNKYIILRKIVCSRQGFREEKHMKrkmEDRKRRPRSLTRVGCNAKLVITRQEeTGRWFVKDFIDE 107
                            6******************************************999988889999*******************99************ PP

                   FAR1  85 HnHelap 91 
                            HnH+lap
  Traes_7DL_B8D140CC3.1 108 HNHPLAP 114
                            ****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.1E-2420114IPR004330FAR1 DNA binding domain
PfamPF105515.2E-18235294IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MFEYLNVVSK MFDSEAEGYE FYNKYALEKG FSVRKSYVEW DGSNKYIILR KIVCSRQGFR  60
EEKHMKRKME DRKRRPRSLT RVGCNAKLVI TRQEETGRWF VKDFIDEHNH PLAPRDLSCL  120
LRSHRRISDE QKADIADMEK CGIRKYRIMD ILCFQYGGFD KVGCIKRDIY NFCHANKQET  180
ISAGDANTVI MHMMARXERD VDFFFXYLVD EHGHLKGLFW ADSQSRLDYE AFGDVIVFDS  240
TYRTNKYNLP FVPFVGLNHH RSTAIFGCGI ISHETSQAYE WMLRTFSDCM AQKHXXXXXX  300
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXHEIEW  360
IYFLQRNKVT SEESWLHQMY QMRKLWYAPY LEGRCFLGLS SNQRSESLNS VLHTHLEGKM  420
SLFEMLEHYE RCLASRRINE ALHDVEALQS VPFTE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17075DRKRRP
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020189695.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A452XQP30.0A0A452XQP3_AEGTS; Uncharacterized protein
STRINGTraes_7DL_B8D140CC3.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-60FAR1-related sequence 5
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]