PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_7DL_AD6EAD1A6.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | NAC | ||||||||
Protein Properties | Length: 241aa MW: 27610.4 Da PI: 8.6175 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 169.2 | 1.3e-52 | 10 | 140 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWka 85 +ppGfrFhPtdeel+ +yL+kkv+ + ++l +vi+e+d++k+ePwdL+ ++ + ++ewyfFs++dkky+tg+r+nrat++g+Wka Traes_7DL_AD6EAD1A6.1 10 VPPGFRFHPTDEELLYYYLRKKVAYEAIDL-DVIREIDLNKLEPWDLKDrcRIGTgPQNEWYFFSHKDKKYPTGTRTNRATTAGFWKA 96 69****************************.9***************943444442456***************************** PP NAM 86 tgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 tg+dk+++ +++ +g++ktLvfy grap+g+ktdW+mheyrl Traes_7DL_AD6EAD1A6.1 97 TGRDKAIFLGsGSRRIGMRKTLVFYVGRAPHGKKTDWIMHEYRL 140 ********9767788***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.98E-57 | 5 | 147 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.542 | 10 | 191 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.0E-28 | 11 | 140 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 7.98E-57 | 179 | 191 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MHPSGGALSV PPGFRFHPTD EELLYYYLRK KVAYEAIDLD VIREIDLNKL EPWDLKDRCR 60 IGTGPQNEWY FFSHKDKKYP TGTRTNRATT AGFWKATGRD KAIFLGSGSR RIGMRKTLVF 120 YVGRAPHGKK TDWIMHEYRL DEDNVEVQVG KAFIRHELKA SPTDTGLSFL TSIIWSEMQE 180 DGWVVCRVFT KKSYTRGVNP AEMAGYDDDE LLHPFPVPSS TAGAMQMITD QKHIMHNPGH 240 L |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-47 | 8 | 193 | 15 | 167 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-47 | 8 | 193 | 15 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-47 | 8 | 193 | 15 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-47 | 8 | 193 | 15 | 167 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-47 | 8 | 193 | 18 | 170 | NAC domain-containing protein 19 |
3swm_B | 3e-47 | 8 | 193 | 18 | 170 | NAC domain-containing protein 19 |
3swm_C | 3e-47 | 8 | 193 | 18 | 170 | NAC domain-containing protein 19 |
3swm_D | 3e-47 | 8 | 193 | 18 | 170 | NAC domain-containing protein 19 |
3swp_A | 3e-47 | 8 | 193 | 18 | 170 | NAC domain-containing protein 19 |
3swp_B | 3e-47 | 8 | 193 | 18 | 170 | NAC domain-containing protein 19 |
3swp_C | 3e-47 | 8 | 193 | 18 | 170 | NAC domain-containing protein 19 |
3swp_D | 3e-47 | 8 | 193 | 18 | 170 | NAC domain-containing protein 19 |
4dul_A | 3e-47 | 8 | 193 | 15 | 167 | NAC domain-containing protein 19 |
4dul_B | 3e-47 | 8 | 193 | 15 | 167 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK102224 | 1e-170 | AK102224.1 Oryza sativa Japonica Group cDNA clone:J033087M22, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020169406.1 | 1e-152 | NAC domain-containing protein 76 | ||||
Swissprot | Q5Z6B6 | 1e-110 | NAC76_ORYSJ; NAC domain-containing protein 76 | ||||
TrEMBL | A0A453S658 | 1e-160 | A0A453S658_AEGTS; Uncharacterized protein | ||||
STRING | Traes_7DL_AD6EAD1A6.1 | 0.0 | (Triticum aestivum) | ||||
STRING | Traes_7DL_AD6EAD1A61.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3461 | 37 | 81 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G79580.3 | 2e-83 | NAC family protein |
Publications ? help Back to Top | |||
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