PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_7DL_AB67A0B36.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

NAC

Protein Properties

Length: 695aa MW: 77059.4 Da PI: 4.5946

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_7DL_AB67A0B36.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	168.2	2.7e-52	9	142	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 lp GfrFhPtdeelv +yLk k++g+ ++ evi+e+d++k+ePwdLp k +++e+ ew+fF+++d+ky++g+r+nrat++gyWkat Traes_7DL_AB67A0B36.1 9 LPLGFRFHPTDEELVRHYLKGKITGQIKNEVEVIPEIDVCKCEPWDLPdKaLIRSEDPEWFFFAPKDRKYPNGSRSNRATEAGYWKAT 96 699*********************988889***********96336677888************************** PP NAM 87 gkdkevlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128 gkd+ ++sk k++ +g+kktLvf++grapkge+t W+mheyr Traes_7DL_AB67A0B36.1 97 GKDRVIKSKgekkKQHMIGMKKTLVFHRGRAPKGERTGWIMHEYRT 142 ****976555556*************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.44E-58	3	163	IPR003441	NAC domain
PROSITE profile	PS51005	56.992	9	163	IPR003441	NAC domain
Pfam	PF02365	1.2E-27	10	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 695 aa Download sequence Send to blast
MTVMELKALP LGFRFHPTDE ELVRHYLKGK ITGQIKNEVE VIPEIDVCKC EPWDLPDKAL 60 IRSEDPEWFF FAPKDRKYPN GSRSNRATEA GYWKATGKDR VIKSKGEKKK QHMIGMKKTL 120 VFHRGRAPKG ERTGWIMHEY RTTEPEFESG EQGGYVLYRL FQKQLEKTER SIPEEMDRSG 180 YSPTPSRSTP DNMEANEEAI TLINKEFPES GLHGCPIELP GTIDTPGTPV TRWLADRNGN 240 SGIDEANVLG MPFHGNVDES PKQADMPVGS LAHLIDSQTK NLGSHEFATV SAPMLSLDDV 300 DKLLLQLPHN SVEDFLNETI ADPDEHSSTA CKVQYDSDTV FMQAQGELLY DGPNWFGNFL 360 SDDTNPQQSG LYENATLLPY GTNPDVLSMD SGDESLQDLF NSMDDSSGQN DVWSNGFGFN 420 PMHQQLQSTV HPNYIFSQQG IAPRRLRLLD SLSDVNVESR ESMTRDEHED EESDIVTSKY 480 TSESVESSAD VDDSESTGVT IMTRRRALTK SAPSDCDDAQ STGITIMARR PAPSSNMPSN 540 EADAEATGIN IMSTSTDSSF TTEQGTAVRR LRLQSNLDAG SCSSVDGASS CIIKHGSENK 600 GLEAEIEEHV DTNFPDDAGN SHADEQMYMP DHEANSGMRL RKTAEKSDKE NKQECGLQPH 660 VRAPRKRGGF AARMILPVLS VALLVLVSVG IYGWA

Sequence ? help Back to Top

Protein Sequence Length: 695 aa Download sequence Send to blast

MTVMELKALP LGFRFHPTDE ELVRHYLKGK ITGQIKNEVE VIPEIDVCKC EPWDLPDKAL  60
IRSEDPEWFF FAPKDRKYPN GSRSNRATEA GYWKATGKDR VIKSKGEKKK QHMIGMKKTL  120
VFHRGRAPKG ERTGWIMHEY RTTEPEFESG EQGGYVLYRL FQKQLEKTER SIPEEMDRSG  180
YSPTPSRSTP DNMEANEEAI TLINKEFPES GLHGCPIELP GTIDTPGTPV TRWLADRNGN  240
SGIDEANVLG MPFHGNVDES PKQADMPVGS LAHLIDSQTK NLGSHEFATV SAPMLSLDDV  300
DKLLLQLPHN SVEDFLNETI ADPDEHSSTA CKVQYDSDTV FMQAQGELLY DGPNWFGNFL  360
SDDTNPQQSG LYENATLLPY GTNPDVLSMD SGDESLQDLF NSMDDSSGQN DVWSNGFGFN  420
PMHQQLQSTV HPNYIFSQQG IAPRRLRLLD SLSDVNVESR ESMTRDEHED EESDIVTSKY  480
TSESVESSAD VDDSESTGVT IMTRRRALTK SAPSDCDDAQ STGITIMARR PAPSSNMPSN  540
EADAEATGIN IMSTSTDSSF TTEQGTAVRR LRLQSNLDAG SCSSVDGASS CIIKHGSENK  600
GLEAEIEEHV DTNFPDDAGN SHADEQMYMP DHEANSGMRL RKTAEKSDKE NKQECGLQPH  660
VRAPRKRGGF AARMILPVLS VALLVLVSVG IYGWA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-46	8	164	16	166	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-46	8	164	16	166	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-46	8	164	16	166	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-46	8	164	16	166	NO APICAL MERISTEM PROTEIN
3swm_A	2e-46	8	164	19	169	NAC domain-containing protein 19
3swm_B	2e-46	8	164	19	169	NAC domain-containing protein 19
3swm_C	2e-46	8	164	19	169	NAC domain-containing protein 19
3swm_D	2e-46	8	164	19	169	NAC domain-containing protein 19
3swp_A	2e-46	8	164	19	169	NAC domain-containing protein 19
3swp_B	2e-46	8	164	19	169	NAC domain-containing protein 19
3swp_C	2e-46	8	164	19	169	NAC domain-containing protein 19
3swp_D	2e-46	8	164	19	169	NAC domain-containing protein 19
4dul_A	2e-46	8	164	16	166	NAC domain-containing protein 19
4dul_B	2e-46	8	164	16	166	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK365939	0.0	AK365939.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2039C20.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020181255.1	0.0	protein NTM1-like 9 isoform X1
TrEMBL	A0A3B6TK92	0.0	A0A3B6TK92_WHEAT; Uncharacterized protein
TrEMBL	A0A453RX49	0.0	A0A453RX49_AEGTS; Uncharacterized protein
STRING	Traes_7DL_AB67A0B36.1	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5172	38	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G33060.1	8e-70	NAC 014

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]