PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_7DL_AB55D9F4E.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

MYB_related

Protein Properties

Length: 242aa MW: 26874.4 Da PI: 6.2452

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_7DL_AB55D9F4E.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	39.2	1.7e-12	3	47	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT+ E++++++a +++ + Wk+I + +g +t q++s+ qky Traes_7DL_AB55D9F4E.1 3 RESWTEPEHDKFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 47 789***************77.*****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	16.567	1	52	IPR017930	Myb domain
TIGRFAMs	TIGR01557	9.8E-19	1	50	IPR006447	Myb domain, plants
SuperFamily	SSF46689	2.92E-15	1	53	IPR009057	Homeodomain-like
SMART	SM00717	6.5E-10	2	50	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	7.8E-6	3	47	IPR009057	Homeodomain-like
Pfam	PF00249	3.1E-10	3	47	IPR001005	SANT/Myb domain
CDD	cd00167	6.18E-8	5	48	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 242 aa Download sequence Send to blast
KSRESWTEPE HDKFLEALQL FDRDWKKIEA FVGSKTVIQI RSHAQKYFLK VQKNGTGEHL 60 PPPRPKRKAA HPYPQKASKT APVAPQAVLS QQPAPPPPPP REQDGVDVSM DASMVVPNTN 120 ANAVVPSWDN ALVQPTQVTS AIATNNCSSS IESQSGTWPT SEAVEQENVL PQMRAMPDFS 180 QVYNFLGSVF DPDTTGHLQR LKAMDPIDVE TVLLLMRNLS VNLINPEFEA HVSFVSSFFA 240 LY

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK360696	0.0	AK360696.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1123J21.
GenBank	AK376956	0.0	AK376956.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3144K07.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020178881.1	1e-164	protein REVEILLE 8-like isoform X1
Swissprot	Q8H0W3	4e-82	RVE6_ARATH; Protein REVEILLE 6
TrEMBL	A0A453SYD6	1e-164	A0A453SYD6_AEGTS; Uncharacterized protein
TrEMBL	A0A453SYR1	1e-164	A0A453SYR1_AEGTS; Uncharacterized protein
TrEMBL	A0A453SYS0	1e-164	A0A453SYS0_AEGTS; Uncharacterized protein
TrEMBL	M8D975	1e-163	M8D975_AEGTA; Myb-like protein G
STRING	Traes_7DL_AB55D9F4E.1	1e-179	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1096	38	111

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52660.1	3e-68	MYB_related family protein

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size. Plant Physiol., 2017. 173(4): p. 2308-2322 [PMID:28254761]