PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7DL_A5ECEDA95.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GATA
Protein Properties Length: 399aa    MW: 43690.8 Da    PI: 4.8188
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7DL_A5ECEDA95.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA51.61.3e-16287323135
                   GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                            C++Cgt    Tp++Rrgp+g++tLCnaCGl+++ kg+
  Traes_7DL_A5ECEDA95.1 287 CHHCGTNAhnTPMMRRGPEGPRTLCNACGLMWANKGM 323
                            ******9999***********************9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132015.188151186IPR010399Tify domain
SMARTSM009793.3E-11151186IPR010399Tify domain
PfamPF062001.1E-12153185IPR010399Tify domain
PfamPF062031.3E-15212254IPR010402CCT domain
PROSITE profilePS5101713.334212254IPR010402CCT domain
SMARTSM004015.1E-13281334IPR000679Zinc finger, GATA-type
PROSITE profilePS501149.249281338IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.66E-12285336No hitNo description
CDDcd002021.48E-13286333No hitNo description
Gene3DG3DSA:3.30.50.101.4E-15286328IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS003440287314IPR000679Zinc finger, GATA-type
PfamPF003204.1E-14287322IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXPAAAD AVIDHLAAVA AEAEALNASI  60
AAVAAEAEAM NAYEHAQEQE MEEEEEEEEE EEEEEMEEEE DEGEGDGQHE HGQHGGNGES  120
VPMDAEAVAQ AAAAXXXXXX XXGAMVSAIV PPATGNQLTL SFQGEVYVFD SVSPDKVQAV  180
LLLLGGRELN PGMGAGASSS TPYSKRLNFP HRVASLMRFR EKRKERNFDK KIRYTVRKEV  240
ALRMQRNRGQ FTSSKPKPDD GTSELATADG SPNWGSVEGR PPSAASCHHC GTNAHNTPMM  300
RRGPEGPRTL CNACGLMWAN KGMLRDLSKS TPPSLQMVST GPNDSGDLNS LSAEWKHPLS  360
AEWKHPLSAE WKCCHSALCR ATKPSTSDRC QRSRPWVFN
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), and drought and salt stresses. Down-regulated by jasmonate and wounding. {ECO:0000269|PubMed:19618278}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3631600.0AK363160.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2013C24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020192767.11e-161GATA transcription factor 20-like isoform X3
SwissprotQ5Z4U51e-123GAT20_ORYSJ; GATA transcription factor 20
TrEMBLA0A453SQ570.0A0A453SQ57_AEGTS; Uncharacterized protein
STRINGTraes_7DL_A5ECEDA95.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43253868
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.22e-73ZIM-LIKE 2