PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_7DL_999E12D5D.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | G2-like | ||||||||
Protein Properties | Length: 305aa MW: 33319.2 Da PI: 6.1824 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 100.1 | 1.4e-31 | 47 | 101 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 ++rlrWt eLH +F+eav++LGG+++AtPk il++m+v+gLt++hvkSHLQkYRl Traes_7DL_999E12D5D.1 47 RQRLRWTDELHGCFLEAVTRLGGPDRATPKGILRTMGVQGLTIYHVKSHLQKYRL 101 58****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.488 | 44 | 104 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.79E-17 | 46 | 101 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.8E-30 | 46 | 102 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.2E-25 | 48 | 102 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.6E-7 | 49 | 100 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 8.7E-22 | 133 | 179 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 305 aa Download sequence Send to blast |
MYEPKPFSST GSAHSNPISH DQQIGPTANN AASSIGGNSS NNSFATRQRL RWTDELHGCF 60 LEAVTRLGGP DRATPKGILR TMGVQGLTIY HVKSHLQKYR LAKYIPDPTA SGDKLEKKDL 120 GNLLAGIESS PGMETSEVLK LQMEVQKRLH EQLEVQRQLQ LRIEAQGKYL QKIMEEQQRL 180 SGVLCESGKM NALALAEEEL HHDFSKTEPS TPVLTSEPPF RDNAVTASGD LEGTDELLKV 240 LSSHDDCLSL DREFSTPDSS CGAGCLLNSP RDSKRARFSN SLGHGNSEFA LPRIIPESSS 300 GSDCS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 8e-23 | 47 | 104 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 8e-23 | 47 | 104 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 8e-23 | 47 | 104 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 8e-23 | 47 | 104 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP330485 | 0.0 | KP330485.1 Triticum aestivum MYB transcription factor SM154 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020148390.1 | 0.0 | myb family transcription factor PHL7-like | ||||
Refseq | XP_020148391.1 | 0.0 | myb family transcription factor PHL7-like | ||||
Swissprot | Q9SJW0 | 1e-81 | PHL7_ARATH; Myb family transcription factor PHL7 | ||||
TrEMBL | A0A0P0C1G8 | 0.0 | A0A0P0C1G8_WHEAT; MYB transcription factor SM154 | ||||
TrEMBL | A0A453SGM0 | 0.0 | A0A453SGM0_AEGTS; Uncharacterized protein | ||||
TrEMBL | N1QSI5 | 0.0 | N1QSI5_AEGTA; Myb family transcription factor APL | ||||
STRING | Traes_7DL_999E12D5D.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2220 | 38 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01060.1 | 2e-66 | G2-like family protein |
Publications ? help Back to Top | |||
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