PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_7DL_7B0ABD21E.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | AP2 | ||||||||
Protein Properties | Length: 238aa MW: 25643.1 Da PI: 10.3265 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.6 | 1.5e-18 | 109 | 158 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta+ Aa+a+++a+ k++g Traes_7DL_7B0ABD21E.2 109 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAQAAARAYDQAAIKFRG 158 78*******************......55************************998 PP | |||||||
2 | AP2 | 23.1 | 1.8e-07 | 201 | 237 | 1 | 42 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeA 42 s+++GV+ +k g+W+A+I +k ++lg ++t e+ Traes_7DL_7B0ABD21E.2 201 SRFRGVTLHK-CGKWEARIGQlM----GKKFVYLGLYDT-EMD 237 789*******.7******77733....25**********.875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 6.08E-16 | 109 | 166 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.4E-10 | 109 | 158 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.504 | 110 | 166 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 9.6E-18 | 110 | 165 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.4E-30 | 110 | 172 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.42E-7 | 201 | 238 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.5E-4 | 202 | 238 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 0.0014 | 202 | 238 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 9.111 | 202 | 238 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MHPAMAAAAA AFFHGGDEEE AGVVVAGGAG VGRRAVFGGG GGFNAARPAF VTQQLFPTTA 60 AASLAVTGTA TQQQAMAAVP ELAWGGAAAH WARPPSRTKS RRGPRSRSSQ YRGVTFYRRT 120 GRWESHIWDC GKQVYLGGFD TAQAAARAYD QAAIKFRGME ADINFVLDDY KEDIGKMSVL 180 SKEELVQVLR RQGAGFVRGS SRFRGVTLHK CGKWEARIGQ LMGKKFVYLG LYDTEMDA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor (By similarity). Involved in spikelet transition (Probable). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK357393 | 0.0 | AK357393.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1052F01. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020151062.1 | 1e-170 | ethylene-responsive transcription factor RAP2-7-like | ||||
Swissprot | A0A0N7KMH0 | 3e-99 | AP24_ORYSJ; APETALA2-like protein 4 | ||||
TrEMBL | A0A3B6TRZ5 | 1e-169 | A0A3B6TRZ5_WHEAT; Uncharacterized protein | ||||
STRING | Traes_7DL_7B0ABD21E.2 | 1e-173 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11821 | 34 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36920.2 | 4e-65 | AP2 family protein |
Publications ? help Back to Top | |||
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