PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_7DL_67FF12B6A.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | bHLH | ||||||||
Protein Properties | Length: 338aa MW: 36593.6 Da PI: 5.2759 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35.4 | 2e-11 | 170 | 212 | 7 | 54 |
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N++++ Lr+++Pk + K++ +iL +++Y+k+L Traes_7DL_67FF12B6A.1 170 MAERRRRKRLNDRLSMLRSVVPKiS------KMDRTSILGDTIDYMKEL 212 79*********************66......****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.269 | 163 | 212 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.96E-16 | 167 | 233 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.3E-12 | 169 | 218 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.9E-9 | 170 | 212 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.6E-16 | 170 | 226 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.59E-5 | 176 | 217 | No hit | No description |
CDD | cd04873 | 2.59E-5 | 266 | 306 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 338 aa Download sequence Send to blast |
MELDEQAFLE ELFSLRRDAT AAWECNAMGD FFSPACGAGA AGMDCFQERH QPTVSVLPTF 60 TASFEQPHPQ QHQHHQHAAV ASGGFDCLSE VYGGGPFPNA VGGGYGEMGF LAAMDPKAAA 120 DGGGLGACKV EPGLAAVDGG AFGSGQMAAL APAPASRKKR VEGMPSKNLM AERRRRKRLN 180 DRLSMLRSVV PKISKMDRTS ILGDTIDYMK ELLERIRRLQ EEMEEAHPGQ PAAAAPLLSV 240 FRELNPNEML ARNTPKFEVE RKEEDTRVEI YCAAKPGLLL STVSTLDTLG LDIQQCVVSC 300 FNDFAMHASC SEMQREMISA DAIKQELFKN AGYGGGCL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 157 | 177 | KKRVEGMPSKNLMAERRRRKR |
2 | 171 | 178 | ERRRRKRL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK356349 | 0.0 | AK356349.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1033I10. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020154444.1 | 0.0 | transcription factor ABORTED MICROSPORES-like | ||||
Swissprot | Q9LSL1 | 1e-76 | BH093_ARATH; Transcription factor bHLH93 | ||||
TrEMBL | A0A3B6TSH4 | 0.0 | A0A3B6TSH4_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A453TA79 | 0.0 | A0A453TA79_AEGTS; Uncharacterized protein | ||||
STRING | Traes_7DL_67FF12B6A.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1302 | 37 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65640.1 | 2e-58 | beta HLH protein 93 |
Publications ? help Back to Top | |||
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