PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7DL_57A842933.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HD-ZIP
Protein Properties Length: 527aa    MW: 59051.1 Da    PI: 6.7741
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7DL_57A842933.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.85e-20133188156
                            TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
               Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                            +++ +++t++q++eLe++F+++++p+ ++r+eL+++l+L+  qVk+WFqN+R++ k
  Traes_7DL_57A842933.2 133 KKRYHRHTQHQIQELEAFFKECPHPDDKQRKELSRSLSLEPLQVKFWFQNKRTQIK 188
                            688999**********************************************9987 PP
2START164.57.7e-5232552719204
                            TT-EEEE..EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECTT...... CS
                  START  19 pgWvkss..esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevissg...... 88 
                             +Wv s   e + ++e+ + f+++         ++ea+r++ vv+m+++ lve l+d++ qW+  +     +a+tl+v+s+g      
  Traes_7DL_57A842933.2 325 XLWVPSLdgETLGEEEYARAFPRGALgpkspeLRSEASRETDVVIMNHVSLVEMLMDVR-QWSALFSsivsRAATLDVLSTGvagnhd 411
                            68999998888889*******998779********************************.99999999999***************** PP

                            EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--S. CS
                  START  89 galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkg. 174
                            galqlm+ae+q++splvp Rd  f+Ry++q+++g w++vdvS+d  ++      +   +++ Sg+li++++ng+skvtwvehv+ ++ 
  Traes_7DL_57A842933.2 412 GALQLMSAEFQMPSPLVPtRDTQFLRYCKQHPGGAWAVVDVSLDGLRSAAR--VGGHFRRRASGCLIQEMPNGYSKVTWVEHVEAGDd 497
                            **********************************************99876..3444447************************9752 PP

                            SXXHHHHHHHHHHHHHHHHHHHHHHTXXXX CS
                  START 175 rlphwllrslvksglaegaktwvatlqrqc 204
                            +++h l+r+lv+sgla+ga++w++tl+rqc
  Traes_7DL_57A842933.2 498 AMVHDLYRPLVNSGLAFGARRWTSTLKRQC 527
                            678*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.2E-23117188IPR009057Homeodomain-like
SuperFamilySSF466891.42E-19122190IPR009057Homeodomain-like
PROSITE profilePS5007117.006130190IPR001356Homeobox domain
SMARTSM003892.9E-18131194IPR001356Homeobox domain
CDDcd000864.47E-18133191No hitNo description
PfamPF000461.5E-17133188IPR001356Homeobox domain
PROSITE patternPS000270165188IPR017970Homeobox, conserved site
SMARTSM002347.0E-35307527IPR002913START domain
CDDcd088753.47E-100326527No hitNo description
PfamPF018521.8E-42326527IPR002913START domain
PROSITE profilePS5084829.235327527IPR002913START domain
SuperFamilySSF559613.43E-26361527No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 527 aa     Download sequence    Send to blast
MPGGMMIPGR NMIGRSNGAG VAYASSSSSA LSLGQNLMDG MHHHQLPAML QHQMVDHHLL  60
PQHHHHPHQQ AATSESDARG PHGGGNNNSS NNNEELEMSK SGTGSDNNLD GGEGGGGEDD  120
EQEDPAGQHP RKKKRYHRHT QHQIQELEAF FKECPHPDDK QRKELSRSLS LEPLQVKFWF  180
QNKRTQIKTQ HERQENTALR TENEKLRAEN MRYKEALANA SCPNCGGPAA IGEMSFDEHH  240
LRVENXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  300
XXXXXXXXXX XXXXXXXXXX XXXXXLWVPS LDGETLGEEE YARAFPRGAL GPKSPELRSE  360
ASRETDVVIM NHVSLVEMLM DVRQWSALFS SIVSRAATLD VLSTGVAGNH DGALQLMSAE  420
FQMPSPLVPT RDTQFLRYCK QHPGGAWAVV DVSLDGLRSA ARVGGHFRRR ASGCLIQEMP  480
NGYSKVTWVE HVEAGDDAMV HDLYRPLVNS GLAFGARRWT STLKRQC
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2492460.0AK249246.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf24d09, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020177398.11e-138homeobox-leucine zipper protein ROC7-like
SwissprotA2YR021e-110ROC7_ORYSI; Homeobox-leucine zipper protein ROC7
SwissprotA3BPF21e-110ROC7_ORYSJ; Homeobox-leucine zipper protein ROC7
TrEMBLA0A3B6TKR91e-137A0A3B6TKR9_WHEAT; Uncharacterized protein
TrEMBLA0A3B6TS471e-137A0A3B6TS47_WHEAT; Uncharacterized protein
TrEMBLA0A453RZP21e-138A0A453RZP2_AEGTS; Uncharacterized protein
TrEMBLA0A453RZT51e-137A0A453RZT5_AEGTS; Uncharacterized protein
TrEMBLA0A453RZV31e-137A0A453RZV3_AEGTS; Uncharacterized protein
STRINGTraes_7DL_57A842933.21e-141(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79938147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.11e-88protodermal factor 2