PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_7DL_52D5D13A1.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

NF-YC

Protein Properties

Length: 197aa MW: 22630.5 Da PI: 4.7508

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_7DL_52D5D13A1.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	148.6	1.3e-46	19	122	1	101
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtr 85 ql++fw++q ie+atd+knh lP +ri+ki+kadedv+misaeaP+l++kace+f le+t+rsw+ a+e krr l++sdiaaav+r Traes_7DL_52D5D13A1.1 19 QLQQFWAEQrseIEQATDIKNHPLPPTRIRKIMKADEDVRMISAEAPALFAKACEMFTLEMTMRSWMVAKEDKRRILQRSDIAAAVAR 106 89****99999*********************************************************************** PP NF-YC 86 tdifdflvdivprdel 101 t i+dfl+d +e+ Traes_7DL_52D5D13A1.1 107 TGIYDFLLDLFTSEET 122 *******9988875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	2.18E-27	7	113	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	2.1E-30	33	104	IPR009072	Histone-fold
Pfam	PF00808	6.2E-18	42	104	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 197 aa Download sequence Send to blast
MYEQSQEYQL QLQQQCQRQL QQFWAEQRSE IEQATDIKNH PLPPTRIRKI MKADEDVRMI 60 SAEAPALFAK ACEMFTLEMT MRSWMVAKED KRRILQRSDI AAAVARTGIY DFLLDLFTSE 120 ETKQGFLLPR AGQGQQPMGA QAGAYPYYYA PEQQVAGASM VYGGPSTYVW QEPQVQEQGH 180 PSSTYVWQEP PQQQEGP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	3e-41	27	116	3	92	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of flowering time under long day (LD) conditions. Functions as repressor of flowering, independently of HD1 and GHD7. Controls flowering time by negatively regulating the expression of EHD1 and HD3A (PubMed:26542958). Component of the NF-Y/HAP transcription factor complex (By similarity). {ECO:0000250, ECO:0000269\|PubMed:26542958}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation under long day (LD) conditions. Expression increases in the middle of daytime, peaks around the end of the light period and gradually decreases during the dark period and beginning of daylight. {ECO:0000269\|PubMed:26542958}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020190889.1	1e-143	nuclear transcription factor Y subunit C-4-like
Swissprot	Q655V5	1e-62	NFYC4_ORYSJ; Nuclear transcription factor Y subunit C-4
TrEMBL	A0A3B6TKQ4	1e-142	A0A3B6TKQ4_WHEAT; Uncharacterized protein
TrEMBL	A0A453SZG0	1e-142	A0A453SZG0_AEGTS; Uncharacterized protein
STRING	Traes_7DL_52D5D13A1.1	1e-143	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2703	37	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63470.2	2e-46	nuclear factor Y, subunit C4

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148] Kim SK, et al. OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions in rice. Planta, 2016. 243(3): p. 563-76 [PMID:26542958]