PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_7DL_44FCA17C4.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

GRAS

Protein Properties

Length: 248aa MW: 26749.5 Da PI: 7.2558

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_7DL_44FCA17C4.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	185.7	3.2e-57	7	248	138	374
GRAS 138 gppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl............vakrledleleeLrvkpgEalaVnlvlqlhrl 213 gpp++RiTg g+ ++++l +tg+rL+ fA+++++pf+f++l ++++ + + +L+++p+E+laVn+vl lh+l Traes_7DL_44FCA17C4.1 7 GPPEVRITGAGA----DRDTLLRTGNRLRAFARSIHLPFHFTPLllscaasthhvaGTSTTPSTAVTSLELHPDETLAVNCVLFLHKL 90 89********....9***********************88877766543222344445899***************** PP GRAS 214 ldesvsleserdevLklvkslsPkvvvvveqeadhnse....sFlerflealeyysalfdsleaklpreseerikvErellgreivnv 297 ++e ++Lk vk + P vv+v+e+ea+ ++ ++ +r+ a+++ysa+f++lea++p+ s+er vE+e+lgrei+ + Traes_7DL_44FCA17C4.1 91 G-----GQDELAAFLKWVKAMAPAVVTVAEREASGGEIdpidELPRRVGVAMDHYSAVFEALEATVPPGSRERLAVEQEVLGREIEAA 173 8.....2233577***************99977556669******************************************* PP GRAS 298 vacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 v g + + le+W + + GF + pls +a++qa+lllr ++ s+gy v+e++g+ +lgW++rpL+svSaW+ Traes_7DL_44FCA17C4.1 174 VGGTGGR---WWRGLERWATAARGTGFAARPLSAFAVSQARLLLRLHYpSEGYLVQESRGACFLGWQTRPLLSVSAWQ 248 999887...7899**************************************************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	28.331	1	227	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.1E-54	7	248	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010014	Biological Process	meristem initiation
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence Send to blast
RADPALGPPE VRITGAGADR DTLLRTGNRL RAFARSIHLP FHFTPLLLSC AASTHHVAGT 60 STTPSTAVTS LELHPDETLA VNCVLFLHKL GGQDELAAFL KWVKAMAPAV VTVAEREASG 120 GEIDPIDELP RRVGVAMDHY SAVFEALEAT VPPGSRERLA VEQEVLGREI EAAVGGTGGR 180 WWRGLERWAT AARGTGFAAR PLSAFAVSQA RLLLRLHYPS EGYLVQESRG ACFLGWQTRP 240 LLSVSAWQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	2e-26	7	247	156	378	Protein SCARECROW
5b3h_A	2e-26	7	247	155	377	Protein SCARECROW
5b3h_D	2e-26	7	247	155	377	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription regulator that controls rice tillering by initiating axillary buds and promoting their outgrowth. Rice tiller is a specialized grain-bearing branch that is formed on the unelongated basal internode and grows independently of the mother stem (culm) by means of its own adventitious roots. {ECO:0000269\|PubMed:12687001}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KR758748	0.0	KR758748.1 Triticum aestivum MOC1 (MOC1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020179440.1	1e-177	protein MONOCULM 1-like
Swissprot	Q84MM9	1e-133	MOC_ORYSJ; Protein MONOCULM 1
TrEMBL	A0A3B6TN01	1e-176	A0A3B6TN01_WHEAT; Uncharacterized protein
TrEMBL	A0A453SGV7	1e-176	A0A453SGV7_AEGTS; Uncharacterized protein
TrEMBL	A0A453SGW5	1e-176	A0A453SGW5_AEGTS; Uncharacterized protein
STRING	Traes_7DL_44FCA17C4.1	1e-178	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3653	34	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55580.1	5e-53	GRAS family protein

Publications ? help Back to Top
Li X, et al. Control of tillering in rice. Nature, 2003. 422(6932): p. 618-21 [PMID:12687001] Sun F, et al. Identification and functional analysis of the MOC1 interacting protein 1. J Genet Genomics, 2010. 37(1): p. 69-77 [PMID:20171579] Sanyal A, et al. Orthologous comparisons of the Hd1 region across genera reveal Hd1 gene lability within diploid Oryza species and disruptions to microsynteny in Sorghum. Mol. Biol. Evol., 2010. 27(11): p. 2487-506 [PMID:20522726] Yan WH, et al. A major QTL, Ghd8, plays pleiotropic roles in regulating grain productivity, plant height, and heading date in rice. Mol Plant, 2011. 4(2): p. 319-30 [PMID:21148627] Xu C, et al. Degradation of MONOCULM 1 by APC/C(TAD1) regulates rice tillering. Nat Commun, 2012. 3: p. 750 [PMID:22434193] Lin Q, et al. Rice APC/C(TE) controls tillering by mediating the degradation of MONOCULM 1. Nat Commun, 2012. 3: p. 752 [PMID:22434195] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148] Liang WH,Shang F,Lin QT,Lou C,Zhang J Tillering and panicle branching genes in rice. Gene, 2014. 537(1): p. 1-5 [PMID:24345551] Zhang B, et al. Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat. Sci Rep, 2015. 5: p. 12211 [PMID:26197925]