PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_7DL_3B340D60A.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

NF-YC

Protein Properties

Length: 257aa MW: 28480.9 Da PI: 4.7933

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_7DL_3B340D60A.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	172.9	3.5e-54	82	185	1	101
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtr 85 ql++fw+++ i++atdfknh+lPlarikki+kadedv+misaeaPv+++kace+fileltlrsw+h+eenkrrtl+k+diaaa+tr Traes_7DL_3B340D60A.1 82 QLQQFWAERlseIDQATDFKNHTLPLARIKKIMKADEDVRMISAEAPVVFAKACEIFILELTLRSWMHTEENKRRTLQKNDIAAAITR 169 89***987779*********************************************************************** PP NF-YC 86 tdifdflvdivprdel 101 td++dflvdi+prde+ Traes_7DL_3B340D60A.1 170 TDVYDFLVDIIPRDEM 185 ************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	3.69E-33	46	176	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	1.9E-37	96	168	IPR009072	Histone-fold
Pfam	PF00808	6.1E-21	104	167	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence Send to blast
MEPSSQPQPA TGDVVAGGSQ VYPASAYPPA ATIAVAPGII PAASQPASPF PANPAQLTAQ 60 NQLIYEQAQQ FHQQLQQQQQ RQLQQFWAER LSEIDQATDF KNHTLPLARI KKIMKADEDV 120 RMISAEAPVV FAKACEIFIL ELTLRSWMHT EENKRRTLQK NDIAAAITRT DVYDFLVDII 180 PRDEMREEGV GLPRAGQPPL LGAPADASYP YYYPQQVPGA VMGYGGQQGH LPYVWQDPQE 240 QQQHQGHPGE QQQSESG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	3e-56	91	182	4	95	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	154	160	RRTLQKN

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of flowering time under long day (LD) conditions. Functions as repressor of flowering, independently of HD1 and GHD7. Controls flowering time by negatively regulating the expression of EHD1 and HD3A (PubMed:26542958). Component of the NF-Y/HAP transcription factor complex (By similarity). {ECO:0000250, ECO:0000269\|PubMed:26542958}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation under long day (LD) conditions. Expression increases in the middle of daytime, peaks around the end of the light period and gradually decreases during the dark period and beginning of daylight. {ECO:0000269\|PubMed:26542958}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ862216	0.0	KJ862216.1 Triticum aestivum eukaryotic transcription factor NF-Y subunit C mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020168173.1	0.0	nuclear transcription factor Y subunit C-4-like
Swissprot	Q655V5	1e-122	NFYC4_ORYSJ; Nuclear transcription factor Y subunit C-4
TrEMBL	M8C366	0.0	M8C366_AEGTA; Nuclear transcription factor Y subunit C-2
STRING	EMT28493	0.0	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2703	37	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56170.2	1e-68	nuclear factor Y, subunit C2

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Kim SK, et al. OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions in rice. Planta, 2016. 243(3): p. 563-76 [PMID:26542958]