PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_7DL_343A252DC.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

ARF

Protein Properties

Length: 1128aa MW: 125968 Da PI: 6.5367

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_7DL_343A252DC.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	72.1	6.9e-23	119	220	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 f+k+lt sd++++g +++p++ ae++ + +++ ++++ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+ Traes_7DL_343A252DC.1 119 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfsM-QPPA-QEIQARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVI 204 99***************************954.4444.48****************************************** PP EEE-SSSEE..EEEEE-S CS B3 82 Fkldgrsefelvvkvfrk 99 F ++++++l+++++r+ Traes_7DL_343A252DC.1 205 FV--RDERQQLLLGIRRA 220 ..4577788***9997 PP
2	Auxin_resp	117.8	9.1e-39	245	328	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+++YnPras++eFv++++k++ka++ +++s+GmRf+m+fete+ +rr++Gt++g++dldpvrW+nS+Wr+L+ Traes_7DL_343A252DC.1 245 AAHAAANNSPFTIFYNPRASPTEFVIPFAKYQKAVYgNQLSLGMRFRMMFETEELGTRRYMGTITGINDLDPVRWKNSQWRNLQ 328 79********************************9*******************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	2.22E-42	108	248	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	1.2E-41	111	234	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.10E-19	118	210	No hit	No description
Pfam	PF02362	7.4E-21	119	220	IPR003340	B3 DNA binding domain
SMART	SM01019	7.4E-23	119	221	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.899	119	221	IPR003340	B3 DNA binding domain
Pfam	PF06507	2.3E-33	245	328	IPR010525	Auxin response factor
Pfam	PF02309	5.0E-10	992	1079	IPR033389	AUX/IAA domain
PROSITE profile	PS51745	27.166	994	1078	IPR000270	PB1 domain
SuperFamily	SSF54277	2.94E-7	1009	1073	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009734	Biological Process	auxin-activated signaling pathway
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1128 aa Download sequence Send to blast
MCQEGEKKAP AINSDLWHAC AGPLVQLPPA GSLVVYFPQG HSEQVAASMQ KDVDAHVPNY 60 PNLPSKLICL LHNITLHADL ETDEVYAQMT LQPVTSYGKE ALQLSELALK QARPQNEFFC 120 KTLTASDTST HGGFSVPRRA AEKIFPPLDF SMQPPAQEIQ ARDLHDNVWT FRHIYRGQPK 180 RHLLTTGWSL FVSGKRLFAG DSVIFVRDER QQLLLGIRRA NRQPTNISSS VLSSDSMHIG 240 ILAAAAHAAA NNSPFTIFYN PRASPTEFVI PFAKYQKAVY GNQLSLGMRF RMMFETEELG 300 TRRYMGTITG INDLDPVRWK NSQWRNLQVG WDESAAGERR NRVSIWEIEP VTAPFFICPP 360 PFFGAKRPRQ LDDESSEMEN LLKRAMPWLG EEICIKDPQT QNTIMPGLSL VQWMNMNMQQ 420 SSSFANTAMQ SEYLRSITNP SMQNIGSGDL SRQLCLQNQL LQQNNMQFNT PKLPQQMQPN 480 NELSKAALPL NQNGASIKPE EQTQDASNFQ RQQQSMNYAL PLSQAQTSLA QAQVLPAVSQ 540 PLLSHQQQQH HHHQQQQQHQ QQEQQHQQQQ QQQKFLQQQQ LLLQQQQLQQ HQHQLQQQQQ 600 QQLGKMPAQL PNLSNQQLQL SDQQLQLQLL QKLQQQQQSL LSQPGVTLAQ LPLIQEQQKL 660 LMDMQQQLSS SHSLSQQQMM PQQSTKIPSQ VASLPPPMQP DTTHQKLPQK QALPADTLEA 720 AIPTTTSHKF SSANGSPLRM PGATHSVVTE EIPSCSTSPS TANGNHLLQP VPGRDQYSSM 780 INTEKAPHST APMSVPSSLD AVTGAQRMTK ELPKLNSNVK QNMMPSKLPN GGAGPQNFAN 840 NAPPTDYLET ASSATSVWLS QADGLLHPNF PMTNFSQQQL FKDAPPDTEI PAEIPSNNAL 900 FGISNDGHVG FPMVTDDFLT NGIDAVKYEN HISTDIDNNY RIPKDAQQEI SSSMVSQSFG 960 ASDMAFNSID SGINDGAFLN KSSWPPAPPV KRMRTFTKVY KRGAVGRSID ISQYAGYEEL 1020 KHALARMFSI EGQLEERQRI GWKLVYRDHE DDILLLGDDP WEEFVNCVKC IRILSPQEVQ 1080 QMSLDGDLGS SVVPNQACSS SEGGGNAWRA RCDQNSGNPS TGSYDQFE

Sequence ? help Back to Top

Protein Sequence Length: 1128 aa Download sequence Send to blast

MCQEGEKKAP AINSDLWHAC AGPLVQLPPA GSLVVYFPQG HSEQVAASMQ KDVDAHVPNY  60
PNLPSKLICL LHNITLHADL ETDEVYAQMT LQPVTSYGKE ALQLSELALK QARPQNEFFC  120
KTLTASDTST HGGFSVPRRA AEKIFPPLDF SMQPPAQEIQ ARDLHDNVWT FRHIYRGQPK  180
RHLLTTGWSL FVSGKRLFAG DSVIFVRDER QQLLLGIRRA NRQPTNISSS VLSSDSMHIG  240
ILAAAAHAAA NNSPFTIFYN PRASPTEFVI PFAKYQKAVY GNQLSLGMRF RMMFETEELG  300
TRRYMGTITG INDLDPVRWK NSQWRNLQVG WDESAAGERR NRVSIWEIEP VTAPFFICPP  360
PFFGAKRPRQ LDDESSEMEN LLKRAMPWLG EEICIKDPQT QNTIMPGLSL VQWMNMNMQQ  420
SSSFANTAMQ SEYLRSITNP SMQNIGSGDL SRQLCLQNQL LQQNNMQFNT PKLPQQMQPN  480
NELSKAALPL NQNGASIKPE EQTQDASNFQ RQQQSMNYAL PLSQAQTSLA QAQVLPAVSQ  540
PLLSHQQQQH HHHQQQQQHQ QQEQQHQQQQ QQQKFLQQQQ LLLQQQQLQQ HQHQLQQQQQ  600
QQLGKMPAQL PNLSNQQLQL SDQQLQLQLL QKLQQQQQSL LSQPGVTLAQ LPLIQEQQKL  660
LMDMQQQLSS SHSLSQQQMM PQQSTKIPSQ VASLPPPMQP DTTHQKLPQK QALPADTLEA  720
AIPTTTSHKF SSANGSPLRM PGATHSVVTE EIPSCSTSPS TANGNHLLQP VPGRDQYSSM  780
INTEKAPHST APMSVPSSLD AVTGAQRMTK ELPKLNSNVK QNMMPSKLPN GGAGPQNFAN  840
NAPPTDYLET ASSATSVWLS QADGLLHPNF PMTNFSQQQL FKDAPPDTEI PAEIPSNNAL  900
FGISNDGHVG FPMVTDDFLT NGIDAVKYEN HISTDIDNNY RIPKDAQQEI SSSMVSQSFG  960
ASDMAFNSID SGINDGAFLN KSSWPPAPPV KRMRTFTKVY KRGAVGRSID ISQYAGYEEL  1020
KHALARMFSI EGQLEERQRI GWKLVYRDHE DDILLLGDDP WEEFVNCVKC IRILSPQEVQ  1080
QMSLDGDLGS SVVPNQACSS SEGGGNAWRA RCDQNSGNPS TGSYDQFE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4ldu_A	1e-168	3	349	43	388	Auxin response factor 5
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK369713	0.0	AK369713.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2096H17.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020163202.1	0.0	auxin response factor 19-like
Swissprot	Q0D9R7	0.0	ARFS_ORYSJ; Auxin response factor 19
TrEMBL	A0A453SP51	0.0	A0A453SP51_AEGTS; Auxin response factor
STRING	Traes_7DL_343A252DC.1	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1409	35	106

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19220.1	0.0	auxin response factor 19

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148] Zhang S, et al. The auxin response factor, OsARF19, controls rice leaf angles through positively regulating OsGH3-5 and OsBRI1. Plant Cell Environ., 2015. 38(4): p. 638-54 [PMID:24995795]