PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7DL_310E46F15.3
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 718aa    MW: 78062.6 Da    PI: 6.5122
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7DL_310E46F15.3genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.83.2e-152468147
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                           r rWT+ E++++++a k++G   W +I +++g ++t+ q++s+ qk+
  Traes_7DL_310E46F15.3 24 RERWTEAEHKRFLEALKLYGRA-WQRIEEHVG-TKTAVQIRSHAQKF 68
                           78******************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.84E-161874IPR009057Homeodomain-like
PROSITE profilePS5129419.1471973IPR017930Myb domain
TIGRFAMsTIGR015571.6E-162271IPR006447Myb domain, plants
SMARTSM007176.5E-122371IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.8E-82464IPR009057Homeodomain-like
PfamPF002491.5E-122467IPR001005SANT/Myb domain
CDDcd001671.03E-82669No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0042754Biological Processnegative regulation of circadian rhythm
GO:0043433Biological Processnegative regulation of sequence-specific DNA binding transcription factor activity
GO:0046686Biological Processresponse to cadmium ion
GO:0048574Biological Processlong-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 718 aa     Download sequence    Send to blast
MEINSSGEET MIKVRKPYTI TKQRERWTEA EHKRFLEALK LYGRAWQRIE EHVGTKTAVQ  60
IRSHAQKFFT KLEKEAINNG TSPGQAHDID IPPPRPKRKP NCPYPRKGCL SSETPTREVP  120
KSSVSLSNSN AEMGSNGTLQ LTCIQKLQRK ELSENGSCSE VINIFREAPS ASFSSSNKSS  180
SNHGVSGGIE PTKTENKDIA TMERKSTSID VGKDVKDIND QEMERNNRVH ISSNYDRSHE  240
DCLDNSMKHM QLKPNTAETT YTGQHAASAP LYQMNKTGAT GAPDPGTEGS HPDQTSDQVG  300
GANGSMDCIH PTLLVDPKMG SSSTAQPFPH NYAGFAPTMQ CHCNQDAYRS SLNMSSTFSN  360
MLVSTLLSNP TVHAAARLAA SYWPAADSNI PVGPNQEVFA ENAQGRHIGS PPSMASVVAA  420
TVAVASAWWA TQGLLPLFAP PMAFPFVPVP TASFPTADVQ RATENFPVDN APKECQVAQE  480
QGQPEAMIVV ASSVSDESGK GEVSPHTELN ISPADKVETT PPTGAETSDA FGNKKKQDRS  540
SCGSNTPSSS DVEAEHVPEN QDQANDKTQQ ACCSNSSAGD MNHRRFRNIS STNDSWKEVS  600
EEGRMAFDKL FSRGKLPQSF SPPQAEGLKV VPRGEQDEAT TVTVDLNKSA AVMDHELDTL  660
VGPRAATFPI ELSHLNMKSR RTGFKPYKRC SVEAKENRVP ASDEVGTKRI RLDSEPST
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00654PBMTransfer from LOC_Os08g06110Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3609660.0AK360966.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1129K17.
GenBankJN6032420.0JN603242.1 Hordeum vulgare circadian clock associated 1 (CCA1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020195458.10.0protein LHY
RefseqXP_020195459.10.0protein LHY
RefseqXP_020195460.10.0protein LHY
RefseqXP_020195461.10.0protein LHY
TrEMBLA0A3B6TKA20.0A0A3B6TKA2_WHEAT; Uncharacterized protein
TrEMBLA0A453RX470.0A0A453RX47_AEGTS; Uncharacterized protein
STRINGTraes_7DL_310E46F15.30.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60313447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01060.31e-40MYB_related family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]