PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7DL_2DE6C6D33.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NAC
Protein Properties Length: 380aa    MW: 42842.1 Da    PI: 8.2302
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7DL_2DE6C6D33.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.51e-52471741129
                    NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                            lppGfrFhPtdee++++y  +kv ++ + +  +i++v+++k+ePw+Lp+k+k +ekewyf+s++d+ky+tg r+nrat++gyWkatgk
  Traes_7DL_2DE6C6D33.1  47 LPPGFRFHPTDEEIIKFYVVPKVLDEAFVV-AAIEDVNLNKYEPWELPEKAKMGEKEWYFYSRKDRKYPTGIRTNRATEAGYWKATGK 133
                            79*************************999.78***************99999*********************************** PP

                    NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                            dke+++   +l+g+kktLvfykgrap+gekt+W+mheyrle
  Traes_7DL_2DE6C6D33.1 134 DKEIFQPPFTLIGMKKTLVFYKGRAPRGEKTNWIMHEYRLE 174
                            *******99******************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.28E-6034209IPR003441NAC domain
PROSITE profilePS5100557.33447209IPR003441NAC domain
PfamPF023652.2E-2648173IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MDIPSSLISS ILIFMVASNI TITPESIAHK ASTMADHLQI QQKQLVLPPG FRFHPTDEEI  60
IKFYVVPKVL DEAFVVAAIE DVNLNKYEPW ELPEKAKMGE KEWYFYSRKD RKYPTGIRTN  120
RATEAGYWKA TGKDKEIFQP PFTLIGMKKT LVFYKGRAPR GEKTNWIMHE YRLESNKKLT  180
SNPSITTRTV TRTNTASKEQ WVVCRIFHKS TGLKKMVTPS YNMPMYTGAE HQQAFVDLDT  240
LPPLMEYDMS STCAHAPLFP GASSYKSHDV GTGSSMMGSV ALPMMNYHYI GNNHHHQMMA  300
NPTLPLSLYQ HQQQHQQMMM HMGADQGLMV GAQPGSGLAS MLSQEDTVAG LRNNYPGNTA  360
TTAVGETSLM NMGMDDIWQN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-51352151171NO APICAL MERISTEM PROTEIN
1ut4_B3e-51352151171NO APICAL MERISTEM PROTEIN
1ut7_A3e-51352151171NO APICAL MERISTEM PROTEIN
1ut7_B3e-51352151171NO APICAL MERISTEM PROTEIN
4dul_A3e-51352151171NAC domain-containing protein 19
4dul_B3e-51352151171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020197195.10.0NAC domain-containing protein 92-like isoform X1
SwissprotQ9FK441e-73NAC87_ARATH; NAC domain-containing protein 87
TrEMBLA0A3B6TN830.0A0A3B6TN83_WHEAT; Uncharacterized protein
STRINGTraes_7DL_2DE6C6D33.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145237121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18400.18e-78NAC domain containing protein 58
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]