PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_7DL_2C70F034C.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | FAR1 | ||||||||
Protein Properties | Length: 666aa MW: 76162 Da PI: 7.7557 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 72.1 | 1.2e-22 | 83 | 174 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskks..krngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 fYn+YA +GF +r+++s+++ k ++ ++++fvC keg++++++ + ++k++r+r + r gC a+++v ++ +kw++tkl+leH+ Traes_7DL_2C70F034C.1 83 FYNAYALGLGFGIRVARSRSErrKGSEVLVMKRFVCMKEGHHKKKDVDsSNKKKRKRLSIRDGCPAMMEVVRRGPEKWVITKLVLEHT 170 9*************99988883355567899**********999987757889999******************************** PP FAR1 87 Hela 90 H ++ Traes_7DL_2C70F034C.1 171 HVIV 174 *875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.1E-20 | 83 | 174 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 1.4E-24 | 259 | 351 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.384 | 543 | 575 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 2.4E-7 | 545 | 573 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 0.0071 | 550 | 577 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 666 aa Download sequence Send to blast |
MEFSSSEDHE LVEDFMDVED DTGTADVDQP TGVMTPHIHC IDPSEGSMST AGNELLPAAD 60 ELGKNAEPYL GMEFVSDAAA RAFYNAYALG LGFGIRVARS RSERRKGSEV LVMKRFVCMK 120 EGHHKKKDVD SSNKKKRKRL SIRDGCPAMM EVVRRGPEKW VITKLVLEHT HVIVSPDKVR 180 EVQLLRLSGK EHADQLQQVR RNVFGDTGAS GLFTYLMKRQ SDNSGFFYNV QVDSGNCLRN 240 AVWVDARSKM SYKYFGDAVY FDTTYTQNEN MLPFAAFTGM NHHGDCVVFG CALILDKTES 300 SYAWIFETWL TAMDKRLPFS FTTDEGKTMT EAVAKVFPQC FHRLCRWRIL SKCKKKLSDV 360 YMRVPELHNE LKRCVNECDT MPVFDMFWGS ILDKYGLREN TWLQSLFEAR HKWVPAYLTS 420 SFFAELSLTR RAETISGFYR NNFSTRAPLL SFITTFDQHI DRLYMNEAQK DLASFPPEQL 480 LKTNSILEKQ AASIYTKAAF EFFQTELIES LHHYAVKVQE SPYEAKYYVE RDGDPPTRHT 540 VVYNVAEKKA WCDCCRFAFS AILCRHVLGV FILADIDMIP EPCITKRWTK KAKTGPVFVG 600 RILEDENRHA DSVTSRFSDL VCDAMRCGEK GALSEGSFKF AKEVLRKAYR EIDKLTRAGP 660 QQVGNR |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 124 | 138 | KKKDVDSSNKKKRKR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK376442 | 0.0 | AK376442.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3124E11. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020185207.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A453SAZ1 | 0.0 | A0A453SAZ1_AEGTS; Uncharacterized protein | ||||
STRING | Traes_7DL_2C70F034C.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18 | 32 | 967 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 1e-115 | FAR1-related sequence 5 |
Publications ? help Back to Top | |||
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