PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_7DL_217C3CE9E.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | C3H | ||||||||
Protein Properties | Length: 582aa MW: 64815.3 Da PI: 7.1908 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 19.3 | 2e-06 | 45 | 65 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ + G+C+ G++C++ H+ Traes_7DL_217C3CE9E.1 45 ECNMYKM-GFCPNGPNCRYKHV 65 6666666.*************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 8.596 | 14 | 39 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0046 | 14 | 40 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.065 | 40 | 67 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0031 | 42 | 66 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.5E-4 | 46 | 64 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF04146 | 1.2E-43 | 184 | 318 | IPR007275 | YTH domain |
PROSITE profile | PS50882 | 56.407 | 184 | 319 | IPR007275 | YTH domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006979 | Biological Process | response to oxidative stress | ||||
GO:0034052 | Biological Process | positive regulation of plant-type hypersensitive response | ||||
GO:1900363 | Biological Process | regulation of mRNA polyadenylation | ||||
GO:2000031 | Biological Process | regulation of salicylic acid mediated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0004521 | Molecular Function | endoribonuclease activity | ||||
GO:0005516 | Molecular Function | calmodulin binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 582 aa Download sequence Send to blast |
MKGEACGFLH QFDKARMPVC RFFRDYGECR EPDCAYKHSY DDVKECNMYK MGFCPNGPNC 60 RYKHVKLPGP PPPVEEVLAK ILQMRSSNFN KFNQHRNNNY NQQGDRPRPP PGSGLPNQNS 120 TDNASTMQPA AGQQAQTMNQ QPQQKQQQVQ HQQKPNTNDQ VQGVPNGSSN QPTRLATPLP 180 QGSSRYFIVK SCNRENLEIS VQQGIWATQR SNEAKLNEAF ESMDNVILIF SINRTRNFQG 240 CAKMTSRIGG YIGGGNWKSA NGTAHYGRNF SLQWLKLCEL SFQKTHHLRN PYNDNLPVKI 300 SRDCQELEPF IGEQLASLLY LEPDSELTAM LVAAEAKREE EKAKGVSADE AADNQDIVLF 360 EDNEEEEEEE SEEEEENNGQ ESQGRGRGRG MMWPPQMQMP RGPMMGPRGF PPNMMGDFGG 420 GFGFGMPDPF GMPRGFPPFG GPRFPGDFPR GPMPGMVFPG RPPQPGGMFP MGLEMMMGPG 480 RGPLMGMGGP GRPNRPIGMA PFMPPPPPRP VKRDQRRPGG DNRGDRYETG SDQGSRGHDN 540 NAGNSGADGN RSQSGDRFGR SAFRDDDSES DEEAAPRRSR KR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zuu_A | 1e-102 | 169 | 346 | 2 | 179 | 30-kDa cleavage and polyadenylation specificity factor 30 |
5zuu_B | 1e-102 | 169 | 346 | 2 | 179 | 30-kDa cleavage and polyadenylation specificity factor 30 |
5zuu_C | 1e-102 | 169 | 346 | 2 | 179 | 30-kDa cleavage and polyadenylation specificity factor 30 |
5zuu_D | 1e-102 | 169 | 346 | 2 | 179 | 30-kDa cleavage and polyadenylation specificity factor 30 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 510 | 516 | VKRDQRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK365542 | 0.0 | AK365542.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2034O11. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020157107.1 | 0.0 | zinc finger CCCH domain-containing protein 45 | ||||
Swissprot | Q0DA50 | 0.0 | C3H45_ORYSJ; Zinc finger CCCH domain-containing protein 45 | ||||
TrEMBL | A0A3B6TQU0 | 0.0 | A0A3B6TQU0_WHEAT; Uncharacterized protein | ||||
STRING | Traes_7DL_217C3CE9E.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5989 | 24 | 28 |
Publications ? help Back to Top | |||
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