PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_7DL_20EC9096A.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB | ||||||||
Protein Properties | Length: 265aa MW: 29139.5 Da PI: 8.2283 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.4 | 1.1e-15 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l+d+++ G+g +W + + + g++R++k+c++rw++yl Traes_7DL_20EC9096A.2 14 KGPWSPEEDRKLKDYIHTNGTGgNWIALPTKAGLKRCGKSCRLRWLNYL 62 79*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 37.6 | 5.1e-12 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g ++ eEd + +++ G++ W+ Ia+ ++ gRt++++k++w++ Traes_7DL_20EC9096A.2 69 GDFSDEEDRVICALFAAIGSR-WSIIAAQLP-GRTDNDVKNYWNT 111 679******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.512 | 9 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.76E-25 | 12 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.6E-11 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.2E-15 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-23 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.34E-9 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 22.262 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 3.1E-11 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.7E-10 | 69 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.1E-22 | 70 | 116 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.24E-8 | 71 | 111 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 265 aa Download sequence Send to blast |
MGRAPCCDKG SVKKGPWSPE EDRKLKDYIH TNGTGGNWIA LPTKAGLKRC GKSCRLRWLN 60 YLRPNIKHGD FSDEEDRVIC ALFAAIGSRW SIIAAQLPGR TDNDVKNYWN TKLKKKQLHL 120 LIAAAAHGQQ YGSRPPAPPF TLEQQHHHHT SSTSIASLGQ LLMFGGRGGD QQQQQQYTSS 180 FSSVDISNNT SAAAVGLQES FMFGGLQFQQ QEEETNNLLS PPAASSSGND IMTYEHHEMI 240 SPSGFFFYGD GAGAAATQEG TRFLY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-24 | 14 | 116 | 7 | 107 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020200060.1 | 0.0 | transcription factor RAX2-like | ||||
TrEMBL | A0A3B6TJ10 | 0.0 | A0A3B6TJ10_WHEAT; Uncharacterized protein | ||||
STRING | Traes_7DL_20EC9096A.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP135 | 38 | 412 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57620.1 | 2e-73 | myb domain protein 36 |
Publications ? help Back to Top | |||
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