PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7DL_1D415A4CF.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 590aa    MW: 63865.2 Da    PI: 6.7622
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7DL_1D415A4CF.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.17.1e-17161205147
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                            r +WT+eE+e++++a k++G   W+ I +++g ++t+ q++s+ qk+
  Traes_7DL_1D415A4CF.2 161 REKWTEEEHEKFLEALKLYGRS-WRQIQEHIG-TKTAVQIRSHAQKF 205
                            789*****************55.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.72E-16155209IPR009057Homeodomain-like
PROSITE profilePS5129422.056156210IPR017930Myb domain
TIGRFAMsTIGR015571.1E-15159208IPR006447Myb domain, plants
SMARTSM007171.6E-14160208IPR001005SANT/Myb domain
PfamPF002491.7E-14161204IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-10161201IPR009057Homeodomain-like
CDDcd001672.10E-11163206No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 590 aa     Download sequence    Send to blast
SSASASSSLR LPRQHVRAPP RRPLLAAPLA GASPLVSPLF AASVSGRFLW VAVLRRPAPV  60
AEGGVFLADP XXXXXXXXXX XXXXXXXXXX FDLGDAEAEI WNPGGRLMAS MALAEERDAL  120
DSSRMPIGTG LSVDVAMEPN EEGMGEHPVK PRKPYTITKQ REKWTEEEHE KFLEALKLYG  180
RSWRQIQEHI GTKTAVQIRS HAQKFFSKVV REPGAKIEIE IPPPRPKRKP LHPYPRKRAN  240
SCNGANAANG QSKLAHMSSS SGSDQENGSP VSVISAMQSD AFGSSMSNPS SRSASPESSD  300
EENIVLPMVN GGEGQQTGID QSHKEADQEN KDTGTSEEDS SDEVQVTSVK LFGKTVVIPD  360
PRKRCSPDTG SGHENREQPS ESSNKGTSQA PLAVDIPTHT KGEQISQSSN KATSQAPLAV  420
EVPTYTNGEQ ISEFSYKATS QAPLAVEIQA YAAPPSGWVL PYNSFPLHFG ESAEARIARL  480
HMWWPYYGFP MVHPSGPSAV AHNGKATDES EAAKSPPVES SSDFVDNTQA TASKQWKVLE  540
SLGTAQAPPS VSNFQLKPST NSAFVRVKPI VSSGDEPVRG FAPYKRCRVE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF9519420.0JF951942.1 Triticum aestivum clone TaMYB59 MYB-related protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020180978.10.0protein LHY-like isoform X1
TrEMBLA0A3B6TTJ90.0A0A3B6TTJ9_WHEAT; Uncharacterized protein
STRINGTraes_7DL_1D415A4CF.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP77833647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37260.12e-34MYB_related family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]