PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_7DL_1913741A8.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | NAC | ||||||||
Protein Properties | Length: 157aa MW: 16700.6 Da PI: 6.9456 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 54.1 | 5.4e-17 | 56 | 144 | 1 | 78 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk...........lelee....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgk 72 lp+G++F+Ptd+el+ e+L++kv++ + + +i+ +i++++P++Lp v+++ + +fF++ +k+y+tg+ Traes_7DL_1913741A8.1 56 LPAGVKFDPTDQELI-EHLEAKVQSGGtgaaaapshplI---DefipTIEGEdGICYTHPEKLP-GVSKDGLSRHFFHRPSKAYTTGT 138 799************.99******999666665554432...154444776646**********.556667799************** PP NAM 73 rknrat 78 rk+r++ Traes_7DL_1913741A8.1 139 RKRRKI 144 ****75 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.31E-16 | 48 | 144 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 14.951 | 56 | 157 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.0E-5 | 57 | 137 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 157 aa Download sequence Send to blast |
MDDGATATAG GGGGASSGGH HLIGSRIEEH RKYMSESSCC PRCGYKIDQK LDWVGLPAGV 60 KFDPTDQELI EHLEAKVQSG GTGAAAAPSH PLIDEFIPTI EGEDGICYTH PEKLPGVSKD 120 GLSRHFFHRP SKAYTTGTRK RRKIQPPATV DASTLSS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020164992.1 | 1e-110 | uncharacterized protein LOC109750443 | ||||
Swissprot | Q9M0F8 | 3e-57 | NAC75_ARATH; NAC domain-containing protein 75 | ||||
TrEMBL | A0A453SDP3 | 1e-111 | A0A453SDP3_AEGTS; Uncharacterized protein | ||||
TrEMBL | A0A453SE10 | 1e-111 | A0A453SE10_AEGTS; Uncharacterized protein | ||||
TrEMBL | A0A453SE11 | 1e-111 | A0A453SE11_AEGTS; Uncharacterized protein | ||||
STRING | Traes_7DL_1913741A8.1 | 1e-112 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1453 | 38 | 117 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29230.1 | 6e-59 | NAC domain containing protein 75 |
Publications ? help Back to Top | |||
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