PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7DL_1717A9083.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 364aa    MW: 38980.4 Da    PI: 7.8454
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7DL_1717A9083.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.23e-1399149255
                            HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            ++ah  +Er+RR+++N+ +  Lr+l+P     + k+ + a+i   +v+YIk+Lq
  Traes_7DL_1717A9083.1  99 KTAHITVERNRRKQMNEHLTVLRSLMPCF---YVKRGDQASIIGGVVDYIKELQ 149
                            689*************************9...9********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.63497148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.42E-1798175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.15E-1499153No hitNo description
PfamPF000101.6E-1099149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.2E-1499161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.1E-11103154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010374Biological Processstomatal complex development
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MGDALCDQLL VDIDGEFQLP TDAEDLFSIL ETWDDCVNGA ATALSPTAGA SSRGGLLGGS  60
ASGNKGSKRR ARQDDCDGTA QTHKRQKCSL EEGGGAAPKT AHITVERNRR KQMNEHLTVL  120
RSLMPCFYVK RGDQASIIGG VVDYIKELQQ VKQSLEAKKQ RKAYTEHVLS PRPPPSSYSP  180
RLPLSPLHKS TPPLSPLLRS TPPLSPRLAV PISPARTPPT PGSPYKLRPL PPPISGSTYV  240
SPAMTPTGYD AASSYLPSLD AIAAELSVYA NRQALQLPPT DPLPDVRVEF AGANLVLKTV  300
SHRAPGQAVK IIAALESRAP ALEILHAKIS TIDDTDVNAF TVKIGIECSL SAEELVQEIQ  360
QTFS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020176650.10.0transcription factor SPEECHLESS-like
TrEMBLA0A3B6TLB00.0A0A3B6TLB0_WHEAT; Uncharacterized protein
STRINGTraes_7DL_1717A9083.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34843577
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53210.15e-36bHLH family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]